HsaEX0007730 @ hg19
Exon Skipping
Gene
ENSG00000123636 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:963]
Coordinates
chr2:160253585-160255405:-
Coord C1 exon
chr2:160255340-160255405
Coord A exon
chr2:160253856-160253900
Coord C2 exon
chr2:160253585-160253611
Length
45 bp
Sequences
Splice sites
3' ss Seq
AAAAGTTTCTTATTTTTAAGGAA
3' ss Score
6.71
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GCTAAAAAGAAAAAGAAGGAAGAAGCGGCAAATGCCAAATTATTGGAGGCCGAGAAACGAATAAAG
Seq A exon
GAAAAAGAAATGAGAAGACAACAAGCTGTTCTTCTGAAACATCAG
Seq C2 exon
GAGTTGGAGAGGCATAGACTAGATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123636-'33-34,'33-33,34-34
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.960 A=0.801 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAAAAAGAAAAAGAAGGAAGAAGC
R:
CATATCTAGTCTATGCCTCTCCAACT
Band lengths:
93-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)