RnoEX6016961 @ rn6
Exon Skipping
Gene
ENSRNOG00000056984 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:RGD Symbol;Acc:1309801]
Coordinates
chr3:46004518-46006141:-
Coord C1 exon
chr3:46006076-46006141
Coord A exon
chr3:46004783-46004827
Coord C2 exon
chr3:46004518-46004544
Length
45 bp
Sequences
Splice sites
3' ss Seq
AAAAGTTTCTTATTTTTAAGGAG
3' ss Score
5.56
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GCTAAAAAGAAAAAGAAGGAAGAAGCAGCAAATGCCAAATTATTGGAGGCCGAGAAACGAACCAAG
Seq A exon
GAGAAAGAACTGAGAAGACAGCAGGCTGTCCTTCTGAAACACCAG
Seq C2 exon
GAGTTGGAGAGGCATAGACTAGATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056984-'36-37,'36-36,37-37=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.667 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAAAAAGAAAAAGAAGGAAGAAGC
R:
CATATCTAGTCTATGCCTCTCCAACT
Band lengths:
93-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]