DreEX0000797 @ danRer10
Exon Skipping
Gene
ENSDARG00000082979 | BAZ2B (2 of 2)
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr9:52391841-52400818:+
Coord C1 exon
chr9:52391841-52391906
Coord A exon
chr9:52392537-52392581
Coord C2 exon
chr9:52400753-52400818
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTTTCTATCTCTTTCTGAAGGAG
3' ss Score
8.28
5' ss Seq
CAGGTATAA
5' ss Score
7.46
Exon sequences
Seq C1 exon
GCTAAAAGGAAAAAGAAGGAAGAGGCTGTCAGCGCCAAAATACTAGAAGCTGAAAAGCGAATAAAG
Seq A exon
GAGAAGGAGCTGCGCAGACAGCAGACCATCATTCTTAAGCACCAG
Seq C2 exon
GAGCGGGAGAGACGTCGTCAGCATGTGATGTTGATGAAGGCGATGGAGGCCAAGAAGAAAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000082979_MULTIEX1-6/13=5-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.300 C2=0.909
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAAAAGGAAAAAGAAGGAAGAGGC
R:
CTCTGCTTTCTTCTTGGCCTCC
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]