DreEX0000780 @ danRer10
Exon Skipping
Gene
ENSDARG00000082979 | BAZ2B (2 of 2)
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr9:52399945-52401036:+
Coord C1 exon
chr9:52399945-52400045
Coord A exon
chr9:52400753-52400818
Coord C2 exon
chr9:52400896-52401036
Length
66 bp
Sequences
Splice sites
3' ss Seq
TACCTCTAATGTGTGTGTAGGAG
3' ss Score
5.84
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
GGGTCTAATAATTCTGATTTCAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGG
Seq A exon
GAGCGGGAGAGACGTCGTCAGCATGTGATGTTGATGAAGGCGATGGAGGCCAAGAAGAAAGCAGAG
Seq C2 exon
GAGAAAGAGCGACTCAAACAGGAGAAACGAAACGAGAAACGACTGAACAAAGAGCGCAAACTGGAGCTCAGACGTCTGGAGCTGGAAATGGCCAAAGAGCTCAACAAACCCAATGAAGACCTGTGTCTGGCGGACCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000082979-'27-32,'27-31,28-32
Average complexity
C2
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.909 C2=0.362
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGTGTGTGTGTGTGTGT
R:
CCATTTCCAGCTCCAGACGTC
Band lengths:
168-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]