DreEX0000798 @ danRer10
Exon Skipping
Gene
ENSDARG00000082979 | BAZ2B (2 of 2)
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr9:52392537-52400818:+
Coord C1 exon
chr9:52392537-52392581
Coord A exon
chr9:52395944-52395970
Coord C2 exon
chr9:52400753-52400818
Length
27 bp
Sequences
Splice sites
3' ss Seq
GCCAACTCTCTCTCTGCCAGGAG
3' ss Score
8.28
5' ss Seq
ATGGTATGG
5' ss Score
6.63
Exon sequences
Seq C1 exon
GAGAAGGAGCTGCGCAGACAGCAGACCATCATTCTTAAGCACCAG
Seq A exon
GAGTTGGAGAGACATAGACTAGATATG
Seq C2 exon
GAGCGGGAGAGACGTCGTCAGCATGTGATGTTGATGAAGGCGATGGAGGCCAAGAAGAAAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000082979_MULTIEX1-7/13=6-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.300 A=0.667 C2=0.909
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000097149fB72
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAGGAGCTGCGCAGAC
R:
TTTCTTCTTGGCCTCCATCGC
Band lengths:
105-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]