GgaEX0019017 @ galGal3
Exon Skipping
Gene
ENSGALG00000012579 | BAZ2B
Description
NA
Coordinates
chr7:38218826-38220385:-
Coord C1 exon
chr7:38220341-38220385
Coord A exon
chr7:38220068-38220094
Coord C2 exon
chr7:38218826-38218891
Length
27 bp
Sequences
Splice sites
3' ss Seq
GTGCCAACTCTTTCTACCAGGAG
3' ss Score
7.07
5' ss Seq
ATGGTATGG
5' ss Score
6.63
Exon sequences
Seq C1 exon
GAAAAAGAGATGCGAAGGCAACAAGCTGTTCTTCTCAAGCACCAG
Seq A exon
GAGTTGGAGAGGCATAGACTAGATATG
Seq C2 exon
GAACGAGAGAGGAGAAGACAGCATATGATGCTTATGAAAGCCATGGAAGCACGTAAAAAGGCGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579-'23-29,'23-27,24-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAAGGCAACAAGCTGTTCT
R:
TCCGCCTTTTTACGTGCTTCC
Band lengths:
99-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]