BtaEX0005321 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020654 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:37076707-37078299:+
Coord C1 exon
chr2:37076707-37076751
Coord A exon
chr2:37076971-37076997
Coord C2 exon
chr2:37078234-37078299
Length
27 bp
Sequences
Splice sites
3' ss Seq
GTGCCAACTCTTTCTACCAGGAG
3' ss Score
7.07
5' ss Seq
ATGGTATGG
5' ss Score
6.63
Exon sequences
Seq C1 exon
GAAAAAGAAATGAGAAGACAGCAAGCTGTTCTTCTAAAGCATCAG
Seq A exon
GAGTTGGAGAGGCATAGACTAGATATG
Seq C2 exon
GAACGAGAGAGAAGGCGACAACATATGATGCTTATGAAAGCTATGGAAGCTCGTAAAAAGGCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020654_CASSETTE5
Average complexity
S*
Mappability confidence:
100%=50=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAATGAGAAGACAGCAAGCT
R:
TCTGCCTTTTTACGAGCTTCCA
Band lengths:
105-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development