MmuEX0007713 @ mm10
Exon Skipping
Gene
ENSMUSG00000026987 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:MGI Symbol;Acc:MGI:2442782]
Coordinates
chr2:59932105-59935280:-
Coord C1 exon
chr2:59935215-59935280
Coord A exon
chr2:59933671-59933715
Coord C2 exon
chr2:59932105-59932170
Length
45 bp
Sequences
Splice sites
3' ss Seq
AAAAGTTTCTTATTTTTAAGGAG
3' ss Score
5.56
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GCTAAAAAGAAAAAGAAGGAAGAAGCGGCAAATGCCAAATTATTGGAGGCCGAGAAACGAACCAAG
Seq A exon
GAGAAAGAACTGAGAAGACAGCAGGCTGTCCTTCTGAAACACCAG
Seq C2 exon
GAACGGGAGCGAAGGCGGCAGCATGTGATGCTTATGAAAGCTATGGAAGCTCGTAAAAAAGCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026987-'71-64,'71-61,72-64
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.955 A=0.775 C2=0.960
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGAAAAAGAAGGAAGAAGCGGC
R:
CATCACATGCTGCCGCCTTC
Band lengths:
92-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types