DreEX6020952 @ danRer10
Exon Skipping
Gene
ENSDARG00000057782 | baz2ba
Description
bromodomain adjacent to zinc finger domain, 2Ba [Source:ZFIN;Acc:ZDB-GENE-070615-37]
Coordinates
chr6:11729248-11734289:+
Coord C1 exon
chr6:11729248-11729313
Coord A exon
chr6:11732505-11732549
Coord C2 exon
chr6:11734263-11734289
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTTATGTTTTGTGTTTGTAGGAG
3' ss Score
8.8
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GCAAAGCGGAAAAAGAGAGAGGAGGCTGCCAATGCCAAAATGTTGGAGGCGGAAAAGCGAATAAAG
Seq A exon
GAGAAGGAGATGAGACGCCAACAGGCTGTTATTCTCAAGCACCAG
Seq C2 exon
GAGATGGAGAGGCATAGACTAGATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057782-'27-24,'27-23,28-24=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.867 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAGCGGAAAAAGAGAGAGG
R:
CATATCTAGTCTATGCCTCTCCATCT
Band lengths:
93-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]