BtaEX6009633 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020654 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:37073336-37076997:+
Coord C1 exon
chr2:37073336-37073407
Coord A exon
chr2:37076707-37076751
Coord C2 exon
chr2:37076971-37076997
Length
45 bp
Sequences
Splice sites
3' ss Seq
AAAAGTTTCTTATTTTTAAGGAA
3' ss Score
6.71
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GCACAGGCAAAAAAGAAAAAGAAGGAAGAAGCAGCAAATGCCAAATTATTGGAGGCCGAGAAACGAATAAAG
Seq A exon
GAAAAAGAAATGAGAAGACAGCAAGCTGTTCTTCTAAAGCATCAG
Seq C2 exon
GAGTTGGAGAGGCATAGACTAGATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020654-'30-34,'30-33,32-34=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.670 A=0.800 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAAAAAGAAGGAAGAAGCAGCA
R:
TCTAGTCTATGCCTCTCCAACTC
Band lengths:
84-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]