HsaINT0017053 @ hg38
Intron Retention
Gene
ENSG00000137936 | BCAR3
Description
breast cancer anti-estrogen resistance 3 [Source:HGNC Symbol;Acc:HGNC:973]
Coordinates
chr1:93567740-93571841:-
Coord C1 exon
chr1:93571670-93571841
Coord A exon
chr1:93567852-93571669
Coord C2 exon
chr1:93567740-93567851
Length
3818 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
AAACACCACCTTTCTTCCAGATC
3' ss Score
7.25
Exon sequences
Seq C1 exon
ACACAACACAATGGCCATCGGCATTGCAGTGGACATTCTGGGATGCACGGGCACTTTGGAGGACCGAGCGGCCACTCTGAGTAAGATCATCCAGGTGGCGGTGGAACTGAAGGATTCCATGGGGGACCTCTATTCCTTCTCAGCTCTCATGAAAGCCCTGGAAATGCCACAG
Seq A exon
GTAAATTTCCAATTACTTTATGTGTACTTAATGTTCTGTAAAGAGATCTGCATGCCATGTTTGGCAAATCAGACTATTTTAGTCAATCTCAAAAGTAAATTGAATCTTAGTGAAAGCTGCTTCATTTAGGGGACAGTGTCCTAAGTATTTGGGGTCTACTTTTTTTTTTCTTTTTTGAGACAGAATCTCACTCTGCCACCTAGGCTAGCAGTGGCACAATCTCAGCTCACTGCAACCTCCACCTCCCAGGCTTAAGTGATTCTCATGCCTCAGCCTCAAGTAGCTGGGACTATAGGCAGGCACCACCACACCCAGCTAATTTTTGTATTTTTAGTAGGGACAGGGTTTCACCAGGTTGGCCTGGAACTCCTGACTTCACATGATCTGCCCGCCTCAGCCTCCCGAAGTGCTGGAATTACAGGCATGAGCCACTGTACCTGGACTGGGGTCTATTTTTTTTTTTTTTTAAACGAAGTCTCGCTCTGTTGTCCAGGCTGCAGTACAATGGTGTGATCTTGGCTCATTGCAACCTCTGTCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATAACAGGCGTGGGCCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTTGCCATGTTGGCCAGGCTGATCTCGAACTCCTGACCTCAGGTGATCTGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAAGCACCACGCCCAGCCTCTGGGGTCTATTTTTTAAGGCAGTAAATATTTGCTGACAGTCCATGCTTTCTCTTTGATGTACAGTAGCAAGTGTCATCCTCATGAACAGTAGTGATTCAAGGAGAACCAATTAGGATGAGACATCTGGCTAAAGTGTGTTGTATAAGAAGGAGACTGCCTCCATCTGGGTCACCAGGTGTGGGCAGTCTAGGATAATCACTGGGAAATGAGACATTTGCAGAGCTTCTATCAGAATCCTTAGAATAGTTTATCTCAGGTCACCTAAAACAGACTGTCCTATTAAAAAGTTCGGATTCCTGGTCCATCTGCCATAGAACTCCCTAATTACCGTTTCTGAAACTGGGCATTTGAATTTATCTGCTGTGCCAGGGATTTTTTAGGATGAGTGTCAAACCTGAATATCTGTATCTGAAGTCAAGCAGGCCTCATAGAGGAAAGTCAGGCTGCCATCTTTATTGCTGAGGATCAGCACTCCCACTTCTGTTCTCCCAAGCCCTGGATGCTTGGAGGACTTGAGTATGAGTTTACAGTCCAGCCAGCAAAACTTTCTAGTAACACCAAAACCGCTGGTCACTCGGCTTGGCTGTTTCATAGCCACAGGTTAGCTCTGAAATCCTGCCAGGTACTCACTGAAATTCCATCATTGCCACTGAAAAACAGCCACAATCACATGTCCCGCAAGTCAGATCATGGCAGGAATAGAATTTACTTGCATTAAAGCAAGGTCACCTTAAAAATAAAAAGTTGAAAACTTAGTGCCTTCATCGGGAATTTGTGGGGGGTCAATTCTAATTATATTTCAGAAGCTTTCAGAATTCTTCAGGTAGACTGGTATTTTGTAGGATTGGTATTTGAAATAAGCAGCCCATAAGTTCTGCCAGATTTTCATGATATACTGATTTCTACTATAACGGGTTATCATTTTTTCATTCAGGTATTTTAATGTGCATTATGTTTATTTCCTGTCACCTAAAACTGCCTAGAATTTTGACAGCAGAGCCAACAGGCCAGGCTGTGGGTAAAGCCTTCCAGCCCAGAGCTTCCCCTGAGACTGGTAAAGGAGATGTTTTGTGGGATCACATGGTTGCCATCCATGACATCAAACTCAGCAGTTAGGGACTTGTCCCCAACCACATTACCATGCTTTGTAGGCGGCTCCCTGCCTTCTAACAGTGTCAGCCTTTCCCTTCTGGAGCACATCAGCAGTGACAGGACACAGTCCTCCAGAGCATACAGTGGCCTAGGAGGAAGTGGCATACCCAGAGAAAGCCCAAAAGGAGGGTCACATTACTTTGCGTGTCACCATCCAACCCAGCCCTTACACTATAGCCACATCTGCCACCTTCTCTTCTCAGCTTCTAGTATCAAGAGAATATGTCCAGGAGATGGGCCTAGCCCAGACCCAGAGGCTTCTTTCAGAAAGGCAATGCCTCAGGGAGTGGGTGTAGGGAGCAGGGGTCTACAGAAGGAAGGGCAGCATGGTGGGCAGCAGGAGGAAGGCGGCCACAGCCTTTTCTTCACAGCACGTCTGCTGGTGCTGAGCCTACTCACCTTCCTTTTGGATACAGGAGCTCTTCAAGGCCAAGTAAATGAATCTCAGCTCTACCACATACCAGCTGGGAAGCCTTGGGCAGTTACCTAATCTCTTCTGTTTTCTCATCTGTAAAAGCCAAAATACCTGTCTTAAAGGGCATTGTGAAGATTAAATGAAATTCTTCAAATATTTGACACAAACTTGGCTCTTATTCCCCAAATACTAATGCCCTTCCTTGTTTCATGTAGAAAACTTAACATAGCCTTGCCGGTTTTAGGGTATGAGTTGGGGACCATTTATCTTAGGACAGTCAGAGTCAGTGGTGTATGCTGCTGCTGACTAAATTGTTCCAAAAGAAAATTGAGGCCCTGAGTTACCTGCAGAAGAAAAGAAATGAGTAGCAGGCATGGTGTCTCATGTTTGTTGTCCCAGCTACTCAGAAGGCTGAGGTGGGAAGATCACTGAGCCTGGGAGGTTGAGGCTACAGTGAGCTGTGATCGCACCACTGCACCCCAGCCTGGGCAACAGAGTGAGACCCCATCTCAAAGAAGAAAAGTCATAAAACTCTTTAAGAGACGAGTTAAACTATAGCTATCCATACAGTGGACTATTATGCAGAAATTTAACAAAATAAGGCTGTTCTATATGTACTTATACTGAATGCTTTTGAGGCAAGGAATGGGTGTGGTTTATGTAGTATATAATATGCATGTATTTATTTTTAAAAGGGGTGTGCGTATAGACAGGAATTTTGGGGAGGTCAATTCCAGTTTTATTTCAAGAGCTTTCAAAATTCTTCAGGTACACTGGAATTTTCTAGGATCAGTATTTAAAATAAGCAACATCAGTTCTGCCGTATTTTCATGATAATGCTGATTTCTATTATAACAAGAGTGTAATTTTTCATTCAGGTGTTTTACTTTGCATCATGTTTATTTCCTCTCATCCAATACTGCCTTGAATTTTGACAGTGGACTGGCCAGCAGGCCAGGCTGTATGTGAAACACACACGCACAAGCAGTTGAAGAGAGTTGCCATCTCTGGGATGCGCTAACAGCAATGCAGATGGGGCGGATGGGGGATTATTTTTTCTTTCTACCCTGCTTTCAGACACTTTGACATTTTTACCATGTGTATCTATCACCTGTTCCAAAATTTAAGCAAAAGGGTAATTTTATTTTATTTATTTTTTTTTTTTTGAGACAGGGTCTCACTCTGTCAACCAGGCTGGAGTGCAGTGGCATGATCTTGGCTCATTGCAACCTCCGCCTCCCAGGTTCAAGCAATTCTCCCGCCTCAACCTCCCGAGTAGCTGGGATTACAGGCACACGCCACCACGCCTGGCTAATTTTTGTATTTGAGTAGAGACAGGGTTTCACCATACTGGCCAGACTGGTCTTGAACTCCTGACCTCAAGTGATCCACCCGCCTCAGCCTCCCAAAGTGCTGGCATTACAGGCGTGAGCTACCACGCCCAGCCACTAAAAGGTAATTTTAAAAAGAACCTTTTCCAAAACACCACCTTTCTTCCAG
Seq C2 exon
ATCACAAGGTTAGAAAAGACGTGGACTGCTCTGCGGCACCAGTACACCCAAACTGCCATTCTCTATGAGAAACAGCTGAAGCCCTTCAGCAAACTCCTGCATGAAGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137936:ENST00000260502:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(29.1=100)
A:
NA
C2:
PF0061714=RasGEF=FE(18.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development