RnoINT0025025 @ rn6
Intron Retention
Gene
ENSRNOG00000013737 | Bcar3
Description
BCAR3, NSP family adaptor protein [Source:RGD Symbol;Acc:1311688]
Coordinates
chr2:226672798-226674502:+
Coord C1 exon
chr2:226672798-226672969
Coord A exon
chr2:226672970-226674390
Coord C2 exon
chr2:226674391-226674502
Length
1421 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
ATAACCTTTCCTTCTTCCAGATC
3' ss Score
11.6
Exon sequences
Seq C1 exon
ACACAACACCATGGCCATTGGCATTGCTGTGGACATTCTGGGCTGCACGGGCACATTGGAGAACCGGGCAGGAACCCTTAATAAGATCATCCAGGTGGCAATGGAACTGAAGGACACCATGGGAGACCTCTATTCCTTCTCAGCCATCATGAAAGCCCTCGAGATGCCTCAG
Seq A exon
GTGAGATGAGCTTCCCACACAACACTTGTCACAGAGTTCTGTACACTGACACCGTGCACATCCGACTGCTCTGGCAACCTCTAAAGATAAACTAAATTTTAGTGAAAGCTGCACCGTTTACGGGCCGCCAAGAGCCCTGTCCTCAGTATTTTGATTCTGTTATAAAAACACTGGTAACTGTTGATAGTTCAATAGCTCATCTTTGATACATAATAACAAGAGTTAGCCTTACAATATTCCTGAAGAACCAGTTAGGGTAAGACACCATGCTGGAGTTTACGGCATGACAGAGGCTGCATCTACTGGTGTCCTCAGGGATGTGGCTATTTGGGGTAATGACTGGTGATACCTTGGCATTTAAGGAGCTCATATCAGAGAATCCCTAAACCAGCGGTCCCTAGTCTGTGGGTCACGACTTCTTTGAGCATCAAAGGAGTCATATGTCAGACATTGTACATATCAGATATTTACATCACGATCAGTAACAATAGCAAAGTTATAGTTATGAAGTAACATTTTACAGTGGGGGTGGGCCACCATAACATGAGGAACTGTATTGCAGGGCATTTTAGCATGGGGAAGGTTGAGAACCACTGCTCTAGACTTGGTTTTTCTCAAAGTCTCTTCCCCAAGGTACGTAAGGCAGTTGTCTAGCTCTCTCACTGGTCATGCAGCACCCCAGCTAGAATATCTCAGGTAGGGTCTGTGACTTTGTCTGCATTGACAGATGCTGGATAATTTCAGAAGCCTGCCTAACACATGGGCCTCTGTTGTGAAGGAAGCGATCTGCTCTCTGTACTACTCAGGTCTGCTTTCCTTTGTGTGAGTGCTTGGGGAACTTTGACTAGTAGTCAGTCCTGCAAGCCAGGTGCAACCAGCAGTGTCAACACTGCTGGGTCTTTGTCTTGGCTGTTTCCTAGACACAGACTAGCTCCGAAATCCTGCCAGGTGCCCATAAATTGCCACCCTTGCCACTGAGGGACACAGCTGCAGTCAGATGTCCTGGAAGTCAGAGCATGCTTGGCACATCATTTTCTTCATTAAAAACGAACAGCAACAAAGGGTGACCCCCTTAAAAGCAAGATACTGAGCAGATTAAGGGACGGGCCCTTACCTGAGATTTCTTAGAATCACACGGTAGGGGAGAACCCATCACTAACCATCCTCTGCTATACACACAAAATAACTACAATGAGATACTTAGGTCCCGGCATTTCCTTTTTAAGTACGTGTAGAAGATGCACACATGCAAACTCTGTGGGATGGGCCCTCAGAGCGATGTAGAATAGGGTATGGGCTTACGCTGCCTCTCACTAGCTGCTCTGACACTTCACGCCCATCTATCTCCTATTCCACAACTTAGGCAGAAAGGCATTTTTTTAAAAGAGCCTTTCTGAAACAATAACCTTTCCTTCTTCCAG
Seq C2 exon
ATCACAAGGTTAGAAAAAACATGGACGGCTCTGAGGCACCACTACACGCAAACAGCCATCCTCTACGAAAAGCAGTTGAAGCCCTTTAGCAAAATCCTGCATGAAGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013737:ENSRNOT00000065111:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(29.8=100)
A:
NA
C2:
PF0061714=RasGEF=FE(19.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAACACCATGGCCATTGG
R:
TGCCTTCATGCAGGATTTTGC
Band lengths:
281-1702
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]