HsaINT0018508 @ hg19
Intron Retention
Gene
ENSG00000141867 | BRD4
Description
bromodomain containing 4 [Source:HGNC Symbol;Acc:13575]
Coordinates
chr19:15355521-15365073:-
Coord C1 exon
chr19:15364963-15365073
Coord A exon
chr19:15355574-15364962
Coord C2 exon
chr19:15355521-15355573
Length
9389 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGG
5' ss Score
6.25
3' ss Seq
CCTTCTCTTTTCCTCTGCAGAGA
3' ss Score
12.04
Exon sequences
Seq C1 exon
CTGAGAAAGTTGATGTGATTGCCGGCTCCTCCAAGATGAAGGGCTTCTCGTCCTCAGAGTCGGAGAGCTCCAGTGAGTCCAGCTCCTCTGACAGCGAAGACTCCGAAACAG
Seq A exon
GTTAGGTGACTTGTGTTCTACGTGTCTTACCAAACTCTTCCCACCTGTGCCTGGCACTAGCTCGGTCCTGTGTCCAGGATGCTAGAGCCCAGAGACGGCACTCCCAGAACTTGCTGGGTTCCTCTGTCTGTCTGTCTCTTTGTTAACTGTCTCCCTGGGGCCATGAATAGCCCTGCACTCTGTGCAGTAGTGTCCATTCTCTCGGCCTGGCCGTTATGCTCTCCCTGCCAGGGTCTGGTCATGGAGGATGAATGGCCAAGGGCGTTGACACTGCGGAGCCCTGGATGGTGGGCGGGGAAGCTGGGCCATGAGGACTGTGGGCGTGGGGGTCCAGGCTGTGCTGTTGACCTTGATGTGACCACACCCAGCTTTCTGCACCAGTGGAGACTTCGTGTCCCCAGGGCCTTCCCCGTATCACAGTCACGTGCAGTGCGGCCGCTTCAGGGAGATGCTTCGCTGGTTTCTGGTGGATGTGGAGCAGACTGCAGCTGGCCAGCCGCATCGCCAGTCTGCTGCTGGCCCTGCCATCACCTGGGCCCCAGCCATTGCCTACCCCTCCCCAGAGTGTGCTCGTTGCTGTGTTGGCTGCTCCTGAATCTGCCCTAACTCCACACGCACCTGGACTTGCGTGTCCCTCCTGCAGTTCTAACTAACAGTCCCTTCTTTTCAAGCCCCGTGGGTCTGCACGTTGGACCCTGGGTTCCCCATTAGAGCCCACCTTCTGAGCAGCAGCCTCAGTGGGAGGTGGAGGCAGGTAGTGATGCTGGGTGCCAGGTGGGAGTGGAGAGGGGACTGCTCTCCTCCAAGTGTGCACTTTCCTCATTATTCTCAGGGGCGCAGATGCTCAGGCTGGCGCAGGGGAGAGGCTAGGGAGGGAGCCATGGTGCCCAGAAGGCCTGGCGACCAGCCCCTGCTGAGAGATGGAGCTAACATCCTGTGTTTACGGCCAACGGGGTTGCCGCTAGGCTGGTGCAGCTGTCAGTGAGCTGGCGTGCTGCAGACCACCTGAGAGCTGGCCCTAGGGTCTCAGGCAGACTGGGGAGTGGGGATCCACAGTGGGAAACCTGTGTTTTGGCAGTAGACTCCTGCATGTTCTCCCACGGGCCTGTCCCATCCCTGGGATTTTATTCTAACTAGAAATAAATGCTAACCCTCAATAATCAGTGCATGTAAATAACTTGATCGTGCCAAGGAAGATTGAGGACCCTTCACGGCAGCTGGGGAGAGCCATGTTGCTCTGAGGTGTGTGTGCACAGATGGGGTGGGGGTAGGTGGCACCTCGGGCCTTGTCAGTATTCCTCTTCCCTTGGACAGCCTGGTGCCCTCTGCTTCCCAGGTGAGTGAGGAGACTTGCCTTGAAGTGGGCTGAAGGACCCTCCAGGACTCCAGATGCCCACATTCTCTACCACAACTGCATGCAGAATGCCGTGGGCAGCTCACTGGCCTCCTGGCCTTCCCTGTCGCCATCCTTCACCCTTTCATCTCTAACCGTTACTCTCCCCACACTGCTTTTGTAATCCATCAGCCAGCAGGAGGCACTGCACCCCATGGCTGCCCAGGAAGGGCTGGCTTTGCCACCCGAAGCTAGGGCCCCCACTCGCAGCAGAGTGACTGGGGTGAATGGCTGTATTCTTGGATCCAATTAGCATTCCTGGTGGCCGCTGACTTTTCACTTTCCATGCCAGCCAAGCCTCCAGCTTGCCTTCCTCTGGGTTTTTGCACCTCCTGTTTTCTAGTTGACTTCTCCTACCAGGGGTTTTGTAGTCTTCTCATCTGAGGATCTGAGTGACCAAGTGGAAACCCCAGATGCTGAAATTGTCAGGGGACCTGATTAACTAAAATGACATGACGTGGTCGTGGCAGTGTGCTGCTTTAGCCCTCACAAGACAAGACACCTTAGAGGGCTGTGGCCATCACATCCTGATTTCCAGTGTGTGATCATGGCCTTTGCCCTTGGCCTCTGCGTCCCTCTTCTGGGCTCCTCTGCTTTGGGAGAGGAGTGGGAATGCTCCTGGTTTCCTGAACGAGTGCCCCACACCCCTCCTGCCGCTGCCGAGATTTTATTATTTTTTCACTCCCCCACTTTAAAAAAAAGTGGAAAGATTGTGCAACAAGTAATCTGAGAGTCCTGGGAACAGCTGTCCTGGCGGGAAGGAGGGCGAGATTTACAGTCTCAGAGCCGCTGGCTCCCAGGCTCCCAGGCTCTGGCGGTCCAGCCCTGGCCGCTCATGCAGCTATCTGGGCTCTGGCCTTCCCCTCTTCCCAGGCGCCCTCCCCACCTTGGGTTTTGCCTGGCTCCCTTTTGTCTTCCCAATCCTGGCCAGCAGGGGCTTTCCTTTGCCTTCTGTGTGCACTGAGTGAGCTCTGTCGTGGGCCGGCAGGGTGCTTCTCCTCTCAGGAGGGGCCGCTGCGAGGGTTTCGTACGGCAGATCCCGAAATGGGAACCCACACCCTGGCACCAGTAAATACAGCCTTCTGCTGCCCTGTCCCGCACAGGACTCTGCACTCTCAGGGCGGGGGGCAGAGGGGGCGTAGCTCCTTCAGCAGCTGCTCTCCTGGGTCCAGGAATCCCGGCAGCCCTGATGTCCATGGCCCGTTACAGGCAGCTCTGCCTTAACGGGAGTGGGTCAGGGTGGGGGAACATTATTTCCCTTTGGTCTTTTGGTGCCTAGTTGATTTGCAGGCCCGCGCCCCCGCCCCCCCCCCCCCCCCCGTTCTTGTGTTTCCATTTGGATTGGAGCCGAAATTCCTGAAAGGGCCTATTTTTGTCACTTATACTACGGGGTTAGTTCCGCTGACAACGGCCCTGAGACATGAATCACCAGAAGAAAACGAATGGAGTCACTAGATTGAGGCTGGGGGGTGTGATACATGAACACCCCTCTTGGTAGCTATCCATAGACCGGGATGCTGTGGACTGATGCAGGCGTGGGGTGGTCCTCTGGGGCCAGGCTCTAGTTCAGGGAGCAACGGAACACAGGCAGGAGGAGGATGGCGGGGGTGGGTGCTGCTTTCCCAGCTGTGTCCCAGGCCACCATGTATTCCCCACCCTCTGCCCCAGCAGCATGCAGTGCAGTGGGCCAGCCCTACCACTTCCTCTGATTCCAGCTATTGCTTGGGCTGTGGTCTTCCATTGAGCTGTGATTCCAGCTAAAGCCTGGAGCTGCTTGAGGATTCTGTATTGAGACAGGCAGGGGTAGGGCACAAATGCCACTCTCCCACCACCCCTAGGGCATCTGCAGACCTGGGTGGAGCAGGCTGGAGGAAGACACTGTCCCAGGTGGGCTGTGGACAGTACTGTGGCTTTGCTGTCATTAGCACTGGGGTTAGGTCTGCCAAGCACATGGGGCAGGGCATGTCCTAGGAATCTTCTAGCTTTCACTTGTCACATAGCTGACATCTGGTTCTTCCCAAGTGTCATGCACAGGTCTTTGTGAGCAGAAGTGTCCCCACAGCTTATGTCCCTCTTAGGAATACCCGTTTAACCTCAGCTACCTGGGCTGGGACAGGGTCTCAGGGAGGTGTGAGAGATCCTCCTGGGCTTTGGTCTGGTCGTCTAGTTGGAACGGGAGCGCAGTCCAGCTATTTTAGTTTCCTGGCTTCCTTTTCCCAGGATTGGAGCATGTGGGTGTTTCTTAATAGCTCCAGGGGAAAAAGGAATGCTTGATGTTTTGGAAAGATTTGAGCTGGGAAGTGCAGACAGAGGCCATGGGGCGTTCTTACCACACAACCAGCCTCAGCTTCCTGACCCCCAGGGTCTTTGAGGGACTTAGTCCATCTCCAGGCCTGCTGCTTGCCTGCTCCAGAGTGTGGCGCTTACCTAGGGGAATGGTGAGGACCCTGGAGGTGGGGGAGTAGGAAGAGACTTGAAGATAGGGCAGTAGCCTTTCTGTCTGCACAGCCAGGTGACTCCCCCCACAAACAGCCAGCATTTGCAGCTGGAGGGATTCTGGGGCTTCATGGGCGGGTGAGGGCGAGCCTTGTGGAATGTGGCCCAGAGTGAGAGGCCGCCAGTGGGCGGGTTTTTCCCATGCCCGCACTCAGGGGCCAGGGAGTAGCACGTCGGTTGCATCCGTGACTCCAGCAGAGGCATCCGCTCTGCTACGTGGGTGGGAACAAGCCCAGTGCCCCTCCCTGGTCCAGGGAGCCATGTTGGATACCCCAAAAAAGGAAAGAAAGGACAAGACTTTATTCCTTAGCCTGTTTCTTTTTCTTTTTTTTCTCCTCCTCAACAGTGTATATAATAGGTTCTGCTTTTTAGAGTTTGAGCTTTTTGTTTGGGGGATCTGGAGGAATGCAGAGATGAGGCTGTTTGCTCTTTCCCCTCCACTGGGGGTCCTGCATTCTGGTACCTCCTTTCTTGTAGACCCAGGAGGAAGGGCTGGCATCGCCTTCCTGAGACTAGACAGTGCACAGCCCCTGGGTGAGATGAGCTCAGAGTCAGCAGGGGCCTGGTGGGCTTGCCACACCTGGCTGGTGGGACAGGGCAGGGGCATCACTCAAATTCAAAAGAAGCCACTTGAGGGCAGTAAAGGAAATGCCGGCGTGCGCTCAGGCAGGGCACACGTGGAGCTTGCTAGTGGGAACCAGGGCCACTCTCTAGAAGCTGAGCAGGCTGGGGGCGGTTTCCAAGGCATCCATGCATTCTGCCTCTGTGACCTTTCTAAGCGGGCGGTGGGTCTGTCCCTACCCAGGGTTAGCCAGGCACGGGGCAGGGCTCCAGTCTCCAGTGCCGTTCTTGTGCCCATCAGCCACCAGGGCGCAGGAGGTTGGCTCAGTCTGCGGTTCTTCTGTTCTTGTGACTTAAATGGTACATTCCACACCATTTCTCTCACACTGGTTTCTCTCTCCCTCTACGTAGGTCCTGCCTAATCATTGGACACGGACTCTTAATAAAACGGTCTTCAGTTCCAGATTCCTTCCCAGCAAGCTATAGCTTAAGTCCATTTTCTTCCGTGAAAGGGACAGGACTCCATCAAGTTATGGAATTCCTCAGAGCCCTGGGCCTGTCCCCCGGGGTGGATTAGTCATGTCCAGCAGCACACGCCTAGTCCCGCCTTCGGGAAGGCTGCCTGCCTGGCCAGCCGCCCAGGCCTCTCTGTGTAAAGACTGCCTGGCTGTCCTGCCCAGCCTTCCTGGTTCTCTGGGGTCCTCTGGGTGGGTGGCATCTCCTGGAGGGTGATGACAATCCCCAACACATGCATTCATGTGGTGCTACTCTGTGTGCAAAGCCAGACCCCAAGTATGTTTTCTCTCTTTGTCCCATCCCTCTTTTTCTGGGACTTTGGACCCTAACTACTTCCCTCCTGAACCTTGCAGTGACATCAGTCCAGGAGAGCTCTCGTTCAGTGTGCGGAAGAACACTCTGACCTCTAGAGCTGTCCTAGATAAGGAGTGGGAGCTTTAGAGGCAAGGCCTCTAGACCCTGGAAGGCTCAGTGAGGCTCTTCCCACAGCATGCTTCTCACTGGTGCCCTGTAAGGCTCGAGCCACCGCTGACTCTGAGCCTTTTGGAGTCTTTCCTCCTTCGTCTCCATTGTTCCCGTGCATTTCCAAAAGCTTAAGTTGCCTGGTGGGCATTTCCCCAGTTTCTTTGGCCTCCGTCTTCTCAAGTCACATAGGGAAAGTACCTCCTGGAACCAGGCTGCAGTATGCAGGACCTGCCAGGCAGGCACTGGTGAAGGGCCTTGGGCCTATCATCCCCCCAACCCCACCTCACCCCACCCGCCTCCTCTAGTGGGGTGAGTCTGGGCTGGTGGACCAGAGAGGGTGTCACAGACCCTCAGGGACTGCCCCATGGACACCTCTGACTGGTGTTAACAGTGTGAACATTTTCCCCGTCTTCAGTCCCTTAGAATGACGACAGCCCCTGGGGTTGGGGCAGGCGAGTGTGGCCACATCATCCAAGCCCTCCCAGAGACACAAATAGGCTTTTTTGCTCTAAAAATAAATACCAGCCCTTTTTTGGTCACAAATCCAGCATCTCAGCAGAAAACTGCCTGACATGAAAAGTCCCCTGAGGAACTGCATCTGCGTTTCAGGGGCTTTTCATTTTTTCTCCTTTTTTAAAGTGTAGATTGTGGGTGCTTCCTAGAGGCCTGCCTTCTTCTGGAACTGGAAGTGGGCTATCACCATGGGCAAGCCCTTGGGTGCAGGCTCCCCACCTGCCTGGGAACTCTGGCAGCTCTCCTCAGCTCCTTGGGCTTGAGCAGCTGCAACTGCCCCAGATTTGCTGTGGAAGCAGGGGCTAGCCCTGGCCTCACCAGGGCCTCCCGGGGCCCTGCATTGATGCTCAGGAGTTCCTGGGCTGCTCTTGATCCTTTCTGGGCATCCAGCTTCCAGTTAAGCTCTGTTTGCCAAACAAACTATTCTCAGCTGCCCTTTGGCCTGCGCCTGATGTGTTCCTGTTGCAGTCCCGCCTGCCTGAGACAGGAGCAGGCAGGAGAGCCTTCATGCCCAGATTCCCACAGGACAATTGGGGAGCTGCTGGCATTGTCTTTCTGGGAAGATTCTGCTTTCTTGGACCAAATGGCAGCCTGATTACCAGTGTCGGGCCTGCATGCTGCCCCCGACACACGCACGCACGCGCACACACGTGTGCACATGGGCCATAGCCACAAGCCAGCTCTCCTCCAGGGTCCTTTCAACCTCGCTGTCCAGGGACCCTGTCCTTCTTGCCCGTGGGGCTTCCATCTGGCAGAGAACGTTCAGGGCTTGTTGAACTTGAAAGCTCATTAGACTTAAGCTGTCACCTGTGCTTGGTGCCCCAGGAACAGCCAGAGAGGACAGTGCCCACTCACTTCTTGTTGGCAGCCTCCTGTGCAGGAAGTGCCAGCCGGGCCTCGACGCACCAGCTGGCTGTGGGTCCTGAGGAGGGGCGGGAGGCGGCCGCTCAGTGCAGATGGGGACTCCTCTCCTCTGCCCTGACCTTACCCTCCATTACCTCCTTCACTGGAGTGGGGCTGGGGGGTGGGTGGAATCAGTGTTTTAATCGGATTTTTAAAAAACATTTTATTTCTTTGTACAATTACCATCCTATGTAAAGATGAAATTTGTGTTGAGTTGAAGATTGTCATGGAATAAAGATCACACCGTACTTGAGGCCATCTTCATGTAACCCTTTCTAGAGAGTTTTGTGTGGGGGTGTCTTGGGGCTGGTGTGTTGTGAAGCTGTGCACTTCCTGTCTTGTCTTTTACTGGTAACTCTGACACAAGGCTCAGACCACATGGGCCAGAAGGGGGTACCTCTACCACCAGCCCCTTTAGGCATCTGGTCCTGGGGGTCTGCCGTGCACATGCCGCCTTCTCTCCCCCACTTTTTAGGCCTGCCTTGCCTGGGGGCCCCAGCACTTGCAAGGGGCCCTGGAGACAAGTCCTCAGGATATTCCCTGTGGCCTTTCCAAGGCAGCTGAGACATGCCCCCTGGAACCCCCCACAGGCCCTGCTGCGCTTTGTCCCTACATCTTCTCCTATGGGCCTCTGCTCACAGCCTGCAGGCTGTGAGGGGTTAGAGTGACCATCCCTCTTTTACAACCAAAAAAACAAGGTTTCTTCCAAGGCCACGAGACAACAGGCGAGCCCCAGCATATCCTTCCCTTGCACACACACTTTTTCCCTCAACTCTATATCTGGACACATCCCTGAGGCTTCTCCTAGTCGGACTTCACACGGTGGCCCTGCTGCTTCCCCCTACCTTCCGCCTTCTGCCCCGGGTCCCCTCCAAGGTGTGCCCAGCATGCCCCCAGACAGCGCGGCTCCATCACCTCCTTGTGCCAGGAGAGAAGCCCTGGCCTTTTCTTCCCAGTTCCCTAGTGTGCAGGGTCCCCCTGGTCCTGTGGCTGCCAACCTCTGCAGCCAGCGCTCCTCCCCCCACCACCACAGCAGTCAGACTCCCTGTTGCCCTGACACTGCAAATCTACTCAAGCTTTCCCTTCTGGCATGTCTCACCCACAACAGTATCTCTCTCATCAGATGTCATACTCTGACCCAGAGCGTCCTGAGCCCTGTATGCAGGTTTTAGGCGGGGCCCCAGGTTCCCCCGTGTCCCCAGTTGCAGCCCCTGGTCATTTGTACGAGGACGTGTGTCTGTAGCTGCTGAGGTCTGTGTCTGTGTCTTGTCTGGCGTGGAGTGGTGAGCTCTTACAGGGCACAAGGTCCTTCCCCATCCCTTTTGGTGGCATGCTGCACTGAGGGCCACGTGCCTCACAGAAGCTTAGCGTGGCCCTCCACGAAGCAGATCCAAGTGGAAGGAGCCTGGATTTGGGCAAAGCATGTGTCCTCCAACACCAGCAGCAAGAGGCAGCACCCTGACAAGGAGCTCAGGCGAAGCCAGGCAGTGCCATGAGGTGCTTCTCAGTGACAGGAATCCAAAAGGCGCCATACCATGGGCCCGGCCTCCCATCTGGTGGCAGGCGACTGTGACCTGCCAGCCCATGAGCACTGGCCAGGGCTCATGTCCCCCTGTGGGGCTTGTACACCATCCATGTTTGGTGAGGGGACATCCAACTGGCAAAAGTCCCTTAGTGTAAATCTCTGGGGTGAGGACAGAGGTGGGCACGCTGGCTCTCGAGTACACCTCTCAGGGGCAGACACACCCTGGACCCATCCACCCTACTGTGGTGCCAAGCCGTCGGCCCACACGAGTGGGGGCGTATGCTGCCTTCTGTCTGCAGCATGGTGACTGTGTCCCAAAGCAGGGACTTCTGAGGTCCATCTACCTCTTTAGTAGCTGGTCATTCCCAGGAGGCCAGCCTGCTCCTTTTTTTTCTCCCGGAGTGGGCTCTCTGTGTTTTCCCTTGCCGATATGTTCCTCACCGTCCTGTGGCTCTCAGCCCCAGCTGAGCCTCTCTGCTTCCCTTTGGAGGATGGAAAGGAGTGGGCCTTAGAGGGCCATGCAGTTGGAGGCCCCCGAGAAGCTGCTTTTTAGCCATGTGACCCTGGACAAGTCCCCTCCCTTCTGAAGCCCCACTTTTCTCAGCTGTAAGATGAATGTGACCATTGCAACCATCACAGGTTGTTGGAAAACTGAGCAGGTTGCTGTCCAGGCCATGCACTCAGTCACTATAGTGAGTGACTGACCCTTGAGTAGTGGGAGGCGTTGGGCAAGCTCTCAGCTTCCGGTGCAACCGTGGTGATCTGAAGCTTGGCAGGGGAGGCTTTTTCAGGCACAGTCCCTGCTAGGAAAAGCAGCAGGCAAGTGGGTAGGTGATGCCTCGCATGTCTCTCCCTCTCCCGTGATGACCAACTCATCCCTCATTGAACTCGGCTGCCCTTTCTCAGGGTCACTGGTCCTTCTCCTGAAAGTGCCCTGTTTTCTCGTCTTTCTTCATCCAAGGCCAGCTCACTCACCTTCTCCCCCAGAGCCTCACTACCTTCTCTTTTCCTCTGCAG
Seq C2 exon
AGATGGCTCCGAAGTCAAAAAAGAAGGGGCACCCCGGGAGGGAGCAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141867-BRD4:NM_058243:11
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.961 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)