GgaINT0002975 @ galGal3
Intron Retention
Gene
ENSGALG00000013295 | BRD4
Description
NA
Coordinates
chrUn_random:28070334-28077508:-
Coord C1 exon
chrUn_random:28077398-28077508
Coord A exon
chrUn_random:28070378-28077397
Coord C2 exon
chrUn_random:28070334-28070377
Length
7020 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGA
5' ss Score
5.94
3' ss Seq
NNNNNNNNNNNNNCCATCCCGCT
3' ss Score
0
Exon sequences
Seq C1 exon
CAGAAAAGGTGGACGTAATTGCTGGTTCCTCTAAAATGAAGGGGTTCTCCTCCTCAGAGTCTGAGAGCACCAGCGAGTCCAGCTCCTCCGACAGTGAAGATTCAGAAACAG
Seq A exon
GTTAGATGCAGCTTATTTAAAGACTCAGTCCTATACCTGTTTTCTGTATAAATAAATATGTTTTCATTACCGGCTTGGTCTTTAATTTTTTGTCTTTGTAATTAAACCATTATACACAGTGTAGATGCTGCATGCTGCCCTCTGTGTCCAACTTGGCAGTAGCAGTGTTGTCTCTGGCAGTTCTCAAGCACTGCAAGGTATTGTCGTAAGCGTAGGCTTGCTGAGGTTGGCTGTGGGTTCAGGAGCTGAGCTGCAGTGCCTGCCAGGGTGGCTGTTTGTCTGTCTGAGGACCTAGTTGTGTATTTTTAGGAAGCTGCTGTGTTGTCCTTGCAGGAGGCTCGATGTGTTCTCACCAGGAGCGATGTGTCGGAGGAGGAATCTTGTGTTTGTGTAGCAGAGCCTTTTCCAGAAAGCAGAGGGGCACTTCAGGGCAGCACTGCCTTGCTCTCCCTTCTGCCCTTGTGCCTCCTGGGCTGGGCTTAGGCTGCTCACGTCCTTCCGGAGTGCTGTGCTTTCCTGTAGCACTGCTTGCTGCTGTTCCCTCCTTGGTTTTGCATCAGCAAAGCTCTTTGTGGTTGACTAAAGCTGTTTTTTGTGGCAACTAACCCAGCTTGGAGGTGATATCGGGCTCTTCCCAGCACAGAAATCAGCAGAAGGAACAGAGTCAGTGCTTAGGGCAGGAGATGAGCCTGGAGCTGCTTGCGTCTGTGTGGGTCTGTATAGGTCTGCTTAGGTCTGCTTGGATCTGTGTAGGTCTACTTGGGTCTGCTTAGTTCTCCTTGGATCTATTTGGGTCTGCTTAGGCCTCCTTGGATCTACGTAGGTCTCTTTGGGCCTTTTTAGGTCTGCATAGGTCTACTTGGGTCTGTGTAGGTCTACTTGGATCTACTTAGATCTACTTGGGTCTGCTTAGGTCTGCTTGGGTCTGTGTTGGTCTACCTGGGTCTGTGTAGGTTTACCTGGATCTACGTACGTCTACTTGGGTCTGCTTAGGTCTACTTGGATATTCGTAGGTCTACTTGAGTTTGCTTAGGTCTCCTTGGATGTACATAGGTCCACTTGAGCCTGTGTAGGTCTACTTGAGCCTGCTTGGGTCTGCTTAGGCCTACGTGGATCTGCTTAGATCTACTTGGATCTACGTAGGTCAACTTGGGCCTGCTTAGGTCTACCGGGAACCTCCAAAGAGCTCCAAAACCCAACAGAAACCCTCTCACTTTGGGTTCTTTTCATAGGAATCCCACAAGTTGGCTGCCCCAGGGCTCCTCTCATCTTTTTTCCTCCAAAACAACCAAGGTTGGCAGCACTGCCCCTCAGTGCTGGCAAATTTGTGTGTCTGGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAATTTTGTGTGTCTGGGATAACGCTGCCGTGTTGTCTTTACCATAGCGTGGGGGTTGCATGCTTTTCCCTGCTTTCATGTATTTTTAATAGGATCTGGCTTTTTTTTAGAGGAACTCTAAAGGCTTTACAATGCATAGCAGTGATCAGAATGGCAGTGACTGTCCGGGTGTTGTGTGGCAGAGAGGACAGAAGTTAGAAAATGGCTTTGTTTTGCTAAAATCCATCAGTGGACCGACCACCGTAGGTCACAGACGGGACAAAACCAGAATAAAATGCTGATTTTGCTGAAATTCCAGAGGTTCAGGTAGAGGTCCCAATGGGGCCGTCCCCACCTGGCCCAAGGTGTTGGTGTCCCCTTTCCAAACAAAATGGGGGATAAAAGTTGACCCAAATGGGCCAGAAAAGCACAGCTCTGTGCTCCAAAGAGCTTCAGGTCATGGAGCGAATGGGGCTCAGGTTGTAGGGCTGGGCTCACTGTGCCCCATGGTTTGATTCCTTCAGGTTGTAGTGCTGACCCCACTGAACCCCAAATACATCCTGGTGGGAACTGGGGCTCATCCCCACATCCCATGGCTGTGCTGCTCCCCCCAGCCTAACTAATGGGCTAATAGAGATATTTGCTTGCAGATGAGCACCCCGCAGCCCCACCTCCATGGGCTGCTCCCTATAACCAAACCAGTGCTGACAGTACCGAAACTTTTTTGACCCAAACTGGGGACAGTGCCCTAAAAACAGAGGAGCAGAGAGAGGGGGAGCATTAATGTGCAGATAAAAAGCCCAAACTTTTGGATTTAGGAGAAAAATGCTTTCACAGAGCTGTTCACTCCCGCTCATTAATTGCCCCCTAATTAATTGCTGCAGAGCTGCACCATCAGCTCTGGGTGGTGATGTTGTTGTCACTGTGCTAACAGCAGCAGAACAGTTGATGCCAAAGCATGCAAGCAACGCTGGATCTGCAAACACCATGAAACCATAAACTATAATTAATTGCAATTAATTGCCATTTTGCAGTGCTTTGGGAGCTGCTCATGGGTTCGCTGCCAGCGCTCTCCCGTTGCATTTTGCAGCCCCGATCGTTGCTCACACATCTTTCTTTCTTTCTTTGCAAAGAACTGTTTGCAGTTGAGTGTTGTTCCTAAGTCTGGAACTGCCTTCTTTCCCTGCAAACCCTTATGGTGGTGCTGAGAAGGCTTCAAAGAGTGCCCAAAAAACCCAACCCCAAATCCAAGCTTTGCCTTCAGCTCTGCGAAACCAGTGCTGCAGAACCAGAGGGTTCTTCTGGTTGAACTGGTTGTAATTAACACCTGGCTGCATGCGAATGGCCCCGAGCTGCTGGCACCCAGCTGAGCTTTCAGATCTGGCTTTCTTTTTTGGAATCTCCCACGTTTGGGGAGTAAGTTCTGAACAGCATCCAAACCAAAGGGAAAATGCACTTTGCTCGGCACAGGTGGAGCGGTTTGAGGGTTTGCATTGGGTTTTACTGGGGAAGACCCCAGCGCAGGGCTGCTGTGCTGTGTCAGATCACCAATTCTGGGGTTGTTAATGCAGAGCTTTGCTTGGAGTTGTGCACTCCGTCCATACAAGGGGCAGTGGGGTGCCCTGGGTTCGGTGCTGGGATGCTCTGTGCTCTCTGCTTGCTGCCGTCCATTTGTGCTGCTTGCTGTCGGGGGGGTCCACGCAGATTGTTCTGCTCAGAGCTCAGCTTTCCTCTTTGTTTCAGGGAGGAATCTGTGCTTTTTTTCCCCCTTTTCGGGTTAAGGTTCTCCCTCCAGTTGCTCATTTCTGTACCATGAGCTGTTTCCACGCTGTGTTTGCTGTGCTGAGGCTTTGGGGCACATTTCAGCCCCATTTCTCAGTGCCCATCCCACCCTCTCCCAGCTCAGAAAAGCCCCCCGGTCCCCCAGTTCCCCCCATGGCCATTTTGCCCATTCCAGGTGCTTCTCTGAAGGCTCTGGGGAGTTAAAATGGATTCAGGCAGCCATGGGGAGCACTGTGGGTCAGGGTGAGCACGGACTGAGCCCCATTTTTGGGCCACGGGTGAATAATGCACATCCCTTTGGGTGCCATCACCCCACCGCAGTGCACCCCTTCCCATCCCGCAGCCAATGTTTGCTTTACACCCAGGGAAATTAACTCCATAAGCAATAGTATATTGACAAAAAGCTGCTTGTTGTGCTGTTGTTGTTCCAGTCCTGCTCTCTTGAAGCCCTTTGTTAATGTGTTCCCCCCAGCCCGTCAGCTCAGGGTGGGTGGTGCTGTGCTCTGATAGGGATCTATCACTGCATGCTTCTCTGGCAGACTTGCAATTCTAGCTTCCTCCAATGGCACCAATGTGAACTGTTTGAAAGTTGGAACGAATTTGACCAAGAATGGACTCTTTTCGTACCATTTTAACTCAGATTGCTCCCAGTTAGTGGTTGGTACAAACCTGTTTACTTTCATATTTTGTCTGCATGCTTTTTAACAGTCGTGTAACCACAGCCTCCTTTCAACAACAAATGGGGGATGGTTGGGGGAGGTGGGGGATATGTATAGTTTTTTATCTTTATTTTTGTTTGTTTTAAAATAATAAACTCAATAAAGTGTTTGGCTTGCTATGGAAAATGCACCTTTTGTATCATGCTGGAGTTGTAGTTTTAACCCCTGATGTAAAGCAGAGAGAGCCATAGGGCCGGAGAAGGGCACATTCCTCTGTGCTGCCTGGGAGAGATGGGTGGGAGCAGAAGAGGGCTTAGAGAGGAGAGCACCTGGGGACAGCATTTGTGTCCCAGCCTGGTCCTTCTTGGCCAGATGTGTTGAGATGCACTCACAGAACTTTCATTTCTGTCTTTGTTCGGTGATTTCACGCTGCGGTTGTTCTGGTTTGCTGGCTCCCAGCTGCTCAAAACGAGGTTTTTTTTGGGTACAAAACACGTTTTCTTCATCCTCCAACACATCACACCTGGCCGGTAGGGAGTGCATGGCTATGGCATGGTTTGGCATCTCTGGAACGTGGCAGAGGGTGTTGTGATCATGGAGAGCATTGTGCCATGCAGAGCGACTTCCCAGCCTGGACTGTCACCTCCAGCACTGAGCATACCCCAGGAATGTGATGATGTACCCCAGGAATGTGATGTACACCGTGCACACCAAAACTCCCCTCCAGGATGTCCGTGGGCAGCAGGGAATAGTGCAGGCATCTGCCAAAGAAGCAGTGAGGAAAGACGTTGGATTCACAGCGGTTGATCCCATCCCGTTCTTGGCACAGTTGCTGCTCTAAGCCATGGATGGCTGTCGTGGTCCCCCTTCCTCATCTTTGGGCATTGAAGCTCCTTGGTTGGCATCTCCAGCCCAACTATGGCCATTGCCAACCCACATTGAGGATCTCCAACCCAACTTTGGCCATCTCCAACCCAACTTTGGCCATCTTCAACCCAACATTGGGGATCTTCAATCCAGCGTTGGCGTCTCCAAGCCAACATTGGGCATTGCCGACCCAATGTTGGCATCTCCAACCCAAATCACAGAGAAGATTGCTCTGTTCCAGTGCTCACGTGGCTTTTTCAGCCTCATCACTGGCACTGAGGCTTGTCCTTCCTGATCCTAGCCCATCTCTTTTGAGGTCACGTCTTAATTCCACTCAGCCCAAAGCTTTTCTCATCTCTTCCCCAGTCCTCACAGTCTGCAGTTCTGATTCCTTTCCCTTCCTGCAATGGTTTTTGCCCCTAGTAAGGCTGAAAGAGGGCTCCTTGTAGCCCTTCCCCCATATTACAACCTGCCAGGTGTTCAGCCCACATCCTTGCAGCCATAGGTAAGTGGAGCACCCACAGAAGCATCGCATTTCTCAGCCCATCTTCCTTTTCTCTGCCTCCACGGCCATCGGTGTGCGAATTCTTCCCAGTGCTTTTGCTTTGGGAGGATGAGATCTCCCACTGCTGAGCTGTAGGAGCAGAACCCATCTGTGCATCTCATTGTGAGCACTCAGTCGTAGGGCTTTGCCACGTGGGTGCACCTCAGTCAAAGCATTCTTGTGTTCCAAACTGCTGTTTGGGATGGTGCAGGAAGAGAGCCCGTGTTGGCCAGTGAGCGTTGTGCTCCAGCTCTAAAGGGGCCCGAGAAACCCTCATTCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCATCCC
Seq C2 exon
GCTTCCAGCCACGCGTTCGGACGTCTCACCACGTTTCTCCCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013295:ENSGALT00000035893:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]