BtaINT0026736 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002495 | BRD4
Description
bromodomain containing 4 [Source:HGNC Symbol;Acc:HGNC:13575]
Coordinates
chr7:8891373-8900546:+
Coord C1 exon
chr7:8891373-8891483
Coord A exon
chr7:8891484-8900493
Coord C2 exon
chr7:8900494-8900546
Length
9010 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGG
5' ss Score
6.25
3' ss Seq
CCTTCTCTTTACCTCCACAGAGA
3' ss Score
10.51
Exon sequences
Seq C1 exon
CTGAGAAAGTTGATGTCATTGCTGGCTCCTCCAAGATGAAGGGCTTCTCATCCTCAGAGTCGGAGAGCACCAGCGAGTCCAGCTCCTCTGACAGCGAAGACTCTGAAACAG
Seq A exon
GTTAGGTGTCTTTGATGTTGTCTCACCACACTCCTGCCTGTGTTCCACCCTGTGTCCAGGCTACCAGAGAGCAGAGACGGCAGTCATAAGAACCTGCTGGGCCCTCCCGTCTGTCCATCTTCCTGGTCACCATGTTGACCTCTACCTGGGGTGGTGGGTATCCCAGCACCTACCTCCACCCCACCCCTGACCTGGGCTGGGGGCGGAGACCAGTGGCCAGTGGTATTAACACTGCAGAGCCCTGGGAAAGGAGGAATAGGGGCAGATGATGGAATTGATCTTGGCGTGACCCTGCCCAGCCTCAGAGTCCCCCGGCAGCACTGTTGCATGCAGCTCGGCCCTTTCCAGTGATGTGCTTCGGCAGGGGTGGAGCAGCCTGCTTTTGGCCCCGCTGTTCCCGGGGCTTAGAGCACTGCCATTCTCCCCGGAGTTTGCTCGCTGCTGCATTGGCTGCTCCTAACTGCACGCACTTGGACATGCGTGTCCTGTATTTCTTAACAGTTCGTTCTCTCCATGCTCCACGGGCGTGCACGTGTGCCCCCTGGTGCGGCTAAGCAGCAGCCTTGACGTGGGAGGCGGGGGCCGGTGGAGATGCTGAGAGCTGTGCCGGTGGTGGGGCAGGGGACCTTTCCTCCAGACACAAGCATTTCTGGTTATTCTTGGGAGCTGATGCTCAGACTGGCCCAGAGGAGAGGCTGAGAAGAAGCCTGGTGACTAGGCTCCTCTGAGGTGGAGCTGACTTCTGTGTCTGGGTGAATAGGGTTGTTGGTGGGCAGGCAGGTGTCTTCATCGGCTGAGTCGGCAGTCTGCAGACCGCCCACGAGCCTGCCTTGGGCCGGTCCCTCCAGGCAGGCTGCAGTGTGCACCTCACAGTGGGCAGCAAGGCTCCTGGCGTATTCTTCCGTATGCCTAATCCTGTCTCTGGTACTTTACTGTAACTGGAGGGAAATGACAAGCTCCACTTAGTTCACATAGATAGATAATGTGATCCGGTGGTGCCGAGGAGGTATGAGGATTATTTGCAGTAGTTGAAGAGTGGTGCTGCTCTGAGGTGTGTGGGTCTTGTGGGGCAGGGGTCCCCTGGACCTTGTCACTGTTCCTTTCCCCTTGTAAGGACTCTAGGTTTCCCAGGGGAGGGGGGAGGGGAGCCTTCTCTAGGACACCAGTGCTCTGGACTACCTCCTTTCAGTGGGCCCAAGTGATGTGAAATCCATTGAGGATATTCTGTATTTATTGAGCTCCTGTTGTATGCAGAGACTGCTGTGGGTAGTTTGCTGGTCATGTCTCTATCCTTTACCCTTTTTCCTTTCTTCCTAACCAGCTCCCTCTTCCAGTGTGTTTTTAAAATCTGCTGGCCAGTAGGGGGAGCCACACCCCGTGCTTGCTGAGGCAGAGTGGGGCCTTGGGTCAGGGCCCAGTGCACTGGCCAGGGTGAATGGCTGTATTCTTGGGCCTAATTAGCATTCCAGGTGGCTGCTGACCTCTCACTCTCAGTTCCAGCCAAACCTCAGGTTTGCCTTTGCTTCTGGGGTTTTGTACCTCCTGTGTTTTCTAGCAGGCTTCTCCTACTAGGGGTTTTGCAGCCTTTTCCCCTAAGGATCTGAGCAACCAGAGAAAACCCCAGAGATTCAAATTGGCAGAGGACCTGAGGGCTAAAACCCGCGCGACCAGGCCCCACCCAGCGTGGCGCCTTACGGCATCGTGACCATCACACCCTGGTGTCCCAGTCCTGAGTTCGGACTGTGGCCTTTGTCCCTGACTCCTGAGCTTCTGAGTGCCCTGCACCCCGCCTGATGCCGCCTCCTGTGGAGTAACCATGACGGCATTTCCAGCAGCTCTCTGCTGCTGCCGAGATTTTTTTTTTTCCTTCACATTTTTCCCTCCTTTAAAGAAAGTGGAAAGATTGTGCAACAAGTAATCTGAGAGTCCTGGGAACAGCTGTCCTGGCGGGAAAGAGGGCAAGATTTACAGTCTTGGAGCCGCCAGCCTGCAGGCTCCCAGGCTCCAGCAGTCCAGCCCTGGCGGCTCCCTCGGCTGCCTCAGCTCCTTCTTCTCCCCAGGCGCCCTCCCCACCTTGAGTTTTGCGAGGCCGTTCTTTGTCTTTGTGGTTCTGCCTTTTCCTTTGCCATCTGTGTGCTCCGGGGACCGACTGAGAGCTTCTGCTCTCGGGAGGGACCAACCCTGTAGGTTTGTGCCCTGCACCTCAGGTGTTCCAGGCTCCAAGTGGGAGCCCGTGTCCTGGTTCCAGGGGATGGGCTGTCTGCCACCACCCTCCCGCACAGGAAACTGCTTACTTGCTGGGTGGTTCCTCGTGTGGGGTCCATGGAGCTGGGTAGATTGCTGTGACTAGGTACAGGTGGTTCTGCCTTGGCAGGGAGGGGTGTGGGGGCCTGGTGGGGGGCACTGGGGGGATTTCTCTTGGTCTCTGGGGGCTTAACTGTTTCGCCCTTCTTGTTCTTGTGTTTCCATTTGGATTAGAGCCGAAATTCCTGAAGGGCCTGTATTTGTCAGTTCTGCCAACACAGCCCCAGGACTCAAATCACCAAAAGAAACTGACCAGAGGCACTAAATTGGGGCTAGGGCAGTGGTACGTGGTCTCATCTCTGGCCACTGTCCATAGACAAGGATGCTGCCAACTGCTCAGGACAGGGGGGCTGGCTGTTGGGACAGGGCTACTGTTCAGGGATGCAGTGCATCCACAGACTGGGGTCAGAAGGAGGGGGGTCTTTGCGCCCCAGGCACCATGTGCTCCTCCTCCCGTGAGCAGCAGGCAGCACTGTTGGCCAGACCCACCACATCTTTAGAACCCAACTGTTACCTGAGTCATAGTCTTCCATTGAGCTTTGATTGTGCTTAAACTCTGAATTTGCTTGAGAGGTTTAGTATTGGGACAAAGACAGTGGTACAAGGGCCACCCTCCCACTACCCCTGAGCCAGCGTAAACTTTCACCCCATCCCATTGCTGATTGATGTCTGGCTCCTCCCCAGTGCTACCCACAGGTTTTATGGGCACACAGGGCTGGACACCACCTCCTGTCCCTCTCAGGAGCATCCCTAGCCTAGGCTAGGATAGGAGTTCAGAGCATTCTCCTGGACTTGGTTTTGGTCTTCTAGTTGCAGAGAGAGCATGCACCAGCTATTTTAGTCTCCTGGTTTCCTTTTCCCAGGATTGGAGCATGTGGGTGTTTCTTAATAGCTCCAGGGGGAAAAGGAATGCTTTATGTTTTGGAAAGATTTGAGCTGGAAAGTGCAGACAGAGGCCGTGGGGCATTCTTCCTAGACAACCAACCTCAACTTCCGCGACCCTGGGTCTTGGAATGACTCGGTTCCTGTCCCGTCTTGAGGCCTGCTGCTGCCCACTCCAAGGGTGTGATGCTTGCTCTTGGGGAAGGGCTGAGTCCCTGGCGGGGGTGGGGGTAGGAAGAGATCTGGAGGATGGGGCTATAGCCAATCTGCCTGCAGTGCCAGGCGACCCCTCACACCCACACACATGCAGGGAGGGATGCAAGGGCTTCCCGGGCGAGGGCGCGCCTTGTGGAATGTGCCTTGAATGAGAGAGCAGCCGGTGGGCGGGTTTTTCCCACACACACACACACACACACTTGGGGACCATGGGAGTGCAGTGTTGGTTGCATCCGTGATTCTAACAGAAGCATCTGCTCTGCTCTGTGGGTGGGAAAGAGCCCCAGCCCCTCTCCCCAGTCAAAGGAAGCTGCATTCGATGCCTGGGAAAAAAGAAAGGACAACTTTCTTCCTCAACTTGTTTTTATTTTTAATTTGTTCTCTTCCTTAACAGTGTATGTCACTGGCTCCTCTTTTTTATAGTTTTGCTTGTTTCTTGGAGTTCAGAGGAATGCAGAGGCTGTTAGCTAGAGGTCCTGCACTCCAGAGCTCCTTTCTTAGGGGCATTCCCTCCTTCCAGCTGAGCCCCAAGGCAGGGTCAGCATTACCTTGCTGAGATAGGGTGCAGAAAAGTGGACCCTGGAGGGTAAGGACAGAATCCGTGGGTGCCCAGTGGGTGTGGCACACCACGCGGGACTTCAGAAGTGAGGCAAGGAGAGGACAGGCGGGGTAATCTCTCAGCCGCAGAGCCCAGCAAAGGAGACCCCAGCACGCAGTGCACACACATGGAGCTCGTTACTGGAAGCCATTCTGTCTAGAGGCATGAGCGGGCTCAGGCGGTTCTGGAGATATCTGTGCGTGCCTGATCTGAGGCCCTTTTCAGGGGAAGGTGGGCCTGTCCCCACCCGCAGCTGGCCAGGCAGGGGTGGAACTCCCAGTTGCGGCGCTGTCTTCTCGTGCCCTGACAGCAGGCGGGGCACCGGAGGCTGGCTTGGTCTGCAGTTCTTCTGTTCTTTATGACTTGAACGGTACATTCCACACCATTTCTCTCACACTGGTTTCTCTCTCCCTCTACGTAGGTCCTGCCTAATCATTGGACACGGACTCTTAATAAAACGGTCTTCAGTTCCAGATTCCTTCCCAGCAAGCTATAGCTTAAGTCCATTTTCTTCCGTGAAAGGGACAGGACTCCATCAAGTTATGGAATTCCTCAGAGCCCTGGGCCTGTCCCCCGGGGTGGATTAGTCATGTCCAGCAGCTCACACCTAGTCCCGCCTCCGGGAAGGCTGCCTGCCTGGCTGCCCGCCCGCCCGGGCCTCCTGTGTAAAGACTGCCTGGCTGTTCTGCCCAGCCTCCCTGGTCGTCTGGGGTCCTCTGAGTGGGTGGCATCTCCCAGAGGGTGATGACAATCCCCCTGCACACACATTCATGCGGTGCTGCTCCGTGTGCAAGGCCCCGCCCGTCACAGATGCGTTTTCTGTCTCCACCCCTCCCTCTTTTGGGGGGACTCTGGATCCTAACTGCTTCCCTCCTGGACCTTCCAATGATGTTAGCCCAGGAAAGATCTCACTCAACTCAGCCTCAGGAAGAACATTGTGACATCTAGAGTTTCCCCAAGTGAGGAGCGAGGCTTTAGAGGCGAGGCCAGCTGGGCCCACGGCTCCCTGGGGCTGTCCCTCAGCCTGCCTTCTCTGGTGGCCCACGCTGCTCTGTTGGCCAGAGGCGCCCACCAGCCACAGCTGACCCACAGCCCCCTGGAGTCCTCTCTCTGTTTTCATCGTTCCCACTGTTGTCTGTTGGGCATCTTCCCAATTTCTTTGGCCTCTTCTCCTAAAGTCGCACAGGGAAAGTACCTCCTAGGCGGCCTCCTTGCCCCTCTCTTCCCAGGTACATAGACGCAGACCGCAGGAGCTGCCGGGCAGGCCGGGAGTGAGGGACATCTGGGGAAACGTGGCCGTGCCGCCGGCTGACCTGACTCCTGCAGCCCACAGTCCTTGCCCCCGCTGGGGGTCGAGACCTGGGCTAGTAGCACGAGAGGGCTGGACCAATCAGTGGTGAGGGCATTGGAGCCTTTGGGCCCTCTTCGTGCCCATGCAGGTACTCCCCCCAGTTCAGCCCCCAAGAGTGATGGGAGCCGCCGGGTGGGCCACATCATCCAAGCCCTCTGAGAGGCACTGGATAGGCTTTTTTTTTTTTTGGCTCTAAAAATAAACATCAGCCCTTTTTTAGTCATGAATCCAGCATCTCAGCAGAAAACTGCCTGGCGTGTAAAGTCCCCTAAGGAATAGCGTTTGTTTTAAATGTAGTTGGTGTGTACTTCGAGGCCTGACCGTCTCCTGGCATTTTGGGATCAGCCTCCTCCTGCACCTTGGAGTGGGCTTGAGGAGGTGCAGTTGGCCAGCGCCTGTGTGGAAGCCCTGGCCCCCTCCCCAGCTCCTTGGGACCTTGAGCCCAAGCAGTTGTAACAGCCCCAGGCTGCTCTTGGCCTTGGGTTCTGCTCTCAGCCTCCCCGGAGCCCCTCGGGCCCTGCAGTGATACTTGGGAGTTCCTCAGCTGCTCCCGGATCCTCCAGCCGGTCAGCTTCCAGTTGAGCTCGTTTGCCAAACAGACTATTTTGAGCTGCCCTTTGGCCTGTTCCTGATGTTTCCAGTACTGCTTGGCCTGGCTTGGGTCCGGGGGCTTCATGCCCAGAGATTCCCACAGGACAGTTGGGAAGCTGCTGGCATTGTCTTTCTGGGAAGATTCTGCCGTCTTGGAGCAAATGGCAGGCTAGATTCCCATGGCGTCAGCCTGTGTGCCACCCCACCCCTTCCCGCTCGTGGGCACAGAGGCTGTAGCCCCAGGCCAGCTCTTCCTATGTGATCCTTGCATCTTCTCTGTTCAGGGGTCCTGTCCTTGCCCATGGTGCTTCCGTCTGACAGAGAACTTGATCGTTCGATTCGGGCTGGCACCGATGCCCCAGGAAGAGCAGAGCGAGCAGAAGCCTGCCCACCCTTTCGGCAGCCTCCAGTGTGCGGGCGCTGGCTGGTGCCAGCCGGGCCTGAGAAGTTGCTCTAGGGAAGGGTGGGAGGCCGGGTGTCTGCTGGTGCGGAGGCTTCCAGTCTGTTCAGTTGAGGGGCTCTGCACCTCTGCCCTTGCCTTCCGTCCTGTCTCCTTCCCTTGAGTTGTGGGGGAGTGGGGAGGAATCAGTGTTTTAATCAGATTTTACAAAAACGTTTTAATTCTTTGTACAATTACCATCTTATGTAAAGCTGAAATTTGTGTTGAGTTCAAGATGTTCATGGAATAAAGATCACACAGTACTTGAGGCCATCTTCATGTAACCCTTTCTAGAGAGTTTTGTGTGGGGGGTGTCTTGGGGCTGGTGTGTGGTGAAGTTGTACACTTCCTGTCTTGTCTTCCTACCACGAGGCGAGTGGTGCATGTGAGCCAGCTGTGACAGCCCCAAATAGGCTCCAGCACCCCTTGGTCCCTGCCGCCAGCGCCTTGAGTCCTCTGGTCCTGGTGGTCTGCTGGGTGCCTCCCACCTTCTCTCCCGCTCTAGGCCAGCCCTACCCCGCACTTCTGTGCAGCTTGGGGGTGATACTCCTGGTGACCTTTCTAAGGCAGCTGATACCCACTCCCTGGATCCTTAAGGGCCCCATTGCACTTTGTCCCCTCTAGTTCCCCCAGTGGGCCTCTCTTGCTCATGGCTGCAGGGAGGTGGTGAGGGCTCAAAGCCACTTGTCCCTCTTCTGTGTTGGAAAAAAGTGTTTTCCCCACCAAGGCCATGAGATGAAAGGCCATCTCAACCCCATCCAACCTTTTCCCTGCGACACAGTGTCCTATCCAGGTCATACTTAATGCACTGACCGCCTTCCTGCCCCCAGCCTCCCTTGAGCTGCAATTTCTGTTGCTGGCATCTACCCTGGGAGGGGAGCCCGGCCTGGGAGAACGCCCCGTCCTCTTCCTCCTGTGTGCCATGCTCCAGCCTTGTGTGTGTAGGGTCCCCTCAGCCCTGGGCTTCCATCTTCTGTGTGGCCCAGCGTTCCTTCACCCCGAGGTCCCAGACACCCGGCTCGTGGCCCAATCCTGCAAATTACCCAAACTGCTCCCTTCATACGTTGTGACTCGAGTGTCCTTTCTACCAGGTCTCATACGTGACCTGTAGAGTCCTGAGCCCTGTATCCTGGCATCTCTAGTATCTGGGTTTGGGGCTGGGCCTGCAGTTCCCCCACCCCAGGTGTCCCTAGTCACTGCCACTCAGGTAAAAACGTGTCTGTAGCCGCAGAGTTCTGTGTCACTGTCTTACCTCTTGCATGGAATGGTGAGTTCTGGCAGGGCACGAGGTCTCCCTCACCCCTCTAAGTGGCACACTACACCAAGGCCGTACGCCTCTCCAAAGCTTCCTTAGCACTGCCCTCCGTGAAGCAGCTACCAGCGGAGCTAGCCCCACTTTGGGCAAAAAGCATGTGTCCTCCAGCACCAGCGGCAAGAGCCGGTACCCTGGTGAGGAGCGCAGGGGAGGCCACGCGAAGCGACGAGATCCCAGCTCCCACCTGGTGGTCGGTGGCTTCCCTTCCCAGCCTTCGAGCCCTGGCCAGGCTTACCCTCCCTGTCTCCCGCTCCAGGATGTGCACCCAGCGGTGTTTGGCGAGGGGAATCCTGTGGGCCAAAGTTCCTTAGCATGAAGCTCTATAGAGGCGGGGTAGAGGGGCTCAGGGTGGCTCTTGCACACTCCTCACAGAGACGGGCACACCCCAGATGTGCCCACACAGTGGCAGCAACAAGCCATGGGCTCCTGAGAAGCCAGGACACATACTTTGTCTCCCTACAGCACATGAACCATGTCCCAACACAGGGACTTCTCTGAGGCTGGTCTCCTGAGAGGAAGAGGAGTCTGGCCAGTGGCCGCCGCCTCTGCTGGCCACAGCATCGAGTGCCTCCCTCATTGGTTCCTGGGTCGTCCAGAGAGGCTGGCTGGCTGGCTTCTCTCCCTCCACAAAATGCACAAGCTTGTCAGCACTTCCCGCTTGGCAGCGCTCTCCTCGCCTGTCCCACGGCTCTGTGGCCAGGGCCTTGGCCCGTGCTGGCACCAGTGGTCCCTGTCACCACCTGTACATTTCTGCTTCTCCTGGGACAATGGGAAGGCGCAAGTGTCAGAGGGCAGTGCAGCTGGAGGCCGCTGAGTTGTTACTTTTGGGCTGTGTGGCTGGGGCAAGTCCCTCAACTTCTCTGAGCCTTACTTTACTAGTTTCTTAAATGGATAAGATCATTTCAAGCACCGTGGTGGTCCCAGGGTGAAGCAGGTTGGGGTGCAGATGCTCAGATCCCTGTGGAGGCCTCTGATTAGCCAAGAAGGGGAGACGGTTGAGCCAGGAGGTCCCTCGTAGTTCAGTCCCCCACACGTTCGGGTGTGCTCTTGTCATGAAGCTGATGGTCTGGAGTTTGGTGGGGAAGCTAGGCATGGTCCCTGCTAGGAAAAAAAGCCGCAGGCAAATGGGTAGGTGACACCCACACATCTTTCCCTCCCCTGTGACCCCTCCCAGACGGAACCCGGCCACCCTCCCTCTCACTGTCACTTGGCCCTTCTCCTGAACTCACCCTCTGTTTTCTCCTCACTCTGCGTGGAAGGCCCGCTCCCAGTCTTCTCCCTTAGAGCCTCACCGCCTTCTCTTTACCTCCACAG
Seq C2 exon
AGATGGCTCCGAAGTCAAAAAAGAAGGGGCACCCTGGGAGGGAGCAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002495:ENSBTAT00000003242:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]