HsaINT0018499 @ hg38
Intron Retention
Gene
ENSG00000141867 | BRD4
Description
bromodomain containing 4 [Source:HGNC Symbol;Acc:HGNC:13575]
Coordinates
chr19:15244710-15254262:-
Coord C1 exon
chr19:15254152-15254262
Coord A exon
chr19:15244763-15254151
Coord C2 exon
chr19:15244710-15244762
Length
9389 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGG
5' ss Score
6.25
3' ss Seq
CCTTCTCTTTTCCTCTGCAGAGA
3' ss Score
12.04
Exon sequences
Seq C1 exon
CTGAGAAAGTTGATGTGATTGCCGGCTCCTCCAAGATGAAGGGCTTCTCGTCCTCAGAGTCGGAGAGCTCCAGTGAGTCCAGCTCCTCTGACAGCGAAGACTCCGAAACAG
Seq A exon
GTTAGGTGACTTGTGTTCTACGTGTCTTACCAAACTCTTCCCACCTGTGCCTGGCACTAGCTCGGTCCTGTGTCCAGGATGCTAGAGCCCAGAGACGGCACTCCCAGAACTTGCTGGGTTCCTCTGTCTGTCTGTCTCTTTGTTAACTGTCTCCCTGGGGCCATGAATAGCCCTGCACTCTGTGCAGTAGTGTCCATTCTCTCGGCCTGGCCGTTATGCTCTCCCTGCCAGGGTCTGGTCATGGAGGATGAATGGCCAAGGGCGTTGACACTGCGGAGCCCTGGATGGTGGGCGGGGAAGCTGGGCCATGAGGACTGTGGGCGTGGGGGTCCAGGCTGTGCTGTTGACCTTGATGTGACCACACCCAGCTTTCTGCACCAGTGGAGACTTCGTGTCCCCAGGGCCTTCCCCGTATCACAGTCACGTGCAGTGCGGCCGCTTCAGGGAGATGCTTCGCTGGTTTCTGGTGGATGTGGAGCAGACTGCAGCTGGCCAGCCGCATCGCCAGTCTGCTGCTGGCCCTGCCATCACCTGGGCCCCAGCCATTGCCTACCCCTCCCCAGAGTGTGCTCGTTGCTGTGTTGGCTGCTCCTGAATCTGCCCTAACTCCACACGCACCTGGACTTGCGTGTCCCTCCTGCAGTTCTAACTAACAGTCCCTTCTTTTCAAGCCCCGTGGGTCTGCACGTTGGACCCTGGGTTCCCCATTAGAGCCCACCTTCTGAGCAGCAGCCTCAGTGGGAGGTGGAGGCAGGTAGTGATGCTGGGTGCCAGGTGGGAGTGGAGAGGGGACTGCTCTCCTCCAAGTGTGCACTTTCCTCATTATTCTCAGGGGCGCAGATGCTCAGGCTGGCGCAGGGGAGAGGCTAGGGAGGGAGCCATGGTGCCCAGAAGGCCTGGCGACCAGCCCCTGCTGAGAGATGGAGCTAACATCCTGTGTTTACGGCCAACGGGGTTGCCGCTAGGCTGGTGCAGCTGTCAGTGAGCTGGCGTGCTGCAGACCACCTGAGAGCTGGCCCTAGGGTCTCAGGCAGACTGGGGAGTGGGGATCCACAGTGGGAAACCTGTGTTTTGGCAGTAGACTCCTGCATGTTCTCCCACGGGCCTGTCCCATCCCTGGGATTTTATTCTAACTAGAAATAAATGCTAACCCTCAATAATCAGTGCATGTAAATAACTTGATCGTGCCAAGGAAGATTGAGGACCCTTCACGGCAGCTGGGGAGAGCCATGTTGCTCTGAGGTGTGTGTGCACAGATGGGGTGGGGGTAGGTGGCACCTCGGGCCTTGTCAGTATTCCTCTTCCCTTGGACAGCCTGGTGCCCTCTGCTTCCCAGGTGAGTGAGGAGACTTGCCTTGAAGTGGGCTGAAGGACCCTCCAGGACTCCAGATGCCCACATTCTCTACCACAACTGCATGCAGAATGCCGTGGGCAGCTCACTGGCCTCCTGGCCTTCCCTGTCGCCATCCTTCACCCTTTCATCTCTAACCGTTACTCTCCCCACACTGCTTTTGTAATCCATCAGCCAGCAGGAGGCACTGCACCCCATGGCTGCCCAGGAAGGGCTGGCTTTGCCACCCGAAGCTAGGGCCCCCACTCGCAGCAGAGTGACTGGGGTGAATGGCTGTATTCTTGGATCCAATTAGCATTCCTGGTGGCCGCTGACTTTTCACTTTCCATGCCAGCCAAGCCTCCAGCTTGCCTTCCTCTGGGTTTTTGCACCTCCTGTTTTCTAGTTGACTTCTCCTACCAGGGGTTTTGTAGTCTTCTCATCTGAGGATCTGAGTGACCAAGTGGAAACCCCAGATGCTGAAATTGTCAGGGGACCTGATTAACTAAAATGACATGACGTGGTCGTGGCAGTGTGCTGCTTTAGCCCTCACAAGACAAGACACCTTAGAGGGCTGTGGCCATCACATCCTGATTTCCAGTGTGTGATCATGGCCTTTGCCCTTGGCCTCTGCGTCCCTCTTCTGGGCTCCTCTGCTTTGGGAGAGGAGTGGGAATGCTCCTGGTTTCCTGAACGAGTGCCCCACACCCCTCCTGCCGCTGCCGAGATTTTATTATTTTTTCACTCCCCCACTTTAAAAAAAAGTGGAAAGATTGTGCAACAAGTAATCTGAGAGTCCTGGGAACAGCTGTCCTGGCGGGAAGGAGGGCGAGATTTACAGTCTCAGAGCCGCTGGCTCCCAGGCTCCCAGGCTCTGGCGGTCCAGCCCTGGCCGCTCATGCAGCTATCTGGGCTCTGGCCTTCCCCTCTTCCCAGGCGCCCTCCCCACCTTGGGTTTTGCCTGGCTCCCTTTTGTCTTCCCAATCCTGGCCAGCAGGGGCTTTCCTTTGCCTTCTGTGTGCACTGAGTGAGCTCTGTCGTGGGCCGGCAGGGTGCTTCTCCTCTCAGGAGGGGCCGCTGCGAGGGTTTCGTACGGCAGATCCCGAAATGGGAACCCACACCCTGGCACCAGTAAATACAGCCTTCTGCTGCCCTGTCCCGCACAGGACTCTGCACTCTCAGGGCGGGGGGCAGAGGGGGCGTAGCTCCTTCAGCAGCTGCTCTCCTGGGTCCAGGAATCCCGGCAGCCCTGATGTCCATGGCCCGTTACAGGCAGCTCTGCCTTAACGGGAGTGGGTCAGGGTGGGGGAACATTATTTCCCTTTGGTCTTTTGGTGCCTAGTTGATTTGCAGGCCCGCGCCCCCGCCCCCCCCCCCCCCCCCGTTCTTGTGTTTCCATTTGGATTGGAGCCGAAATTCCTGAAAGGGCCTATTTTTGTCACTTATACTACGGGGTTAGTTCCGCTGACAACGGCCCTGAGACATGAATCACCAGAAGAAAACGAATGGAGTCACTAGATTGAGGCTGGGGGGTGTGATACATGAACACCCCTCTTGGTAGCTATCCATAGACCGGGATGCTGTGGACTGATGCAGGCGTGGGGTGGTCCTCTGGGGCCAGGCTCTAGTTCAGGGAGCAACGGAACACAGGCAGGAGGAGGATGGCGGGGGTGGGTGCTGCTTTCCCAGCTGTGTCCCAGGCCACCATGTATTCCCCACCCTCTGCCCCAGCAGCATGCAGTGCAGTGGGCCAGCCCTACCACTTCCTCTGATTCCAGCTATTGCTTGGGCTGTGGTCTTCCATTGAGCTGTGATTCCAGCTAAAGCCTGGAGCTGCTTGAGGATTCTGTATTGAGACAGGCAGGGGTAGGGCACAAATGCCACTCTCCCACCACCCCTAGGGCATCTGCAGACCTGGGTGGAGCAGGCTGGAGGAAGACACTGTCCCAGGTGGGCTGTGGACAGTACTGTGGCTTTGCTGTCATTAGCACTGGGGTTAGGTCTGCCAAGCACATGGGGCAGGGCATGTCCTAGGAATCTTCTAGCTTTCACTTGTCACATAGCTGACATCTGGTTCTTCCCAAGTGTCATGCACAGGTCTTTGTGAGCAGAAGTGTCCCCACAGCTTATGTCCCTCTTAGGAATACCCGTTTAACCTCAGCTACCTGGGCTGGGACAGGGTCTCAGGGAGGTGTGAGAGATCCTCCTGGGCTTTGGTCTGGTCGTCTAGTTGGAACGGGAGCGCAGTCCAGCTATTTTAGTTTCCTGGCTTCCTTTTCCCAGGATTGGAGCATGTGGGTGTTTCTTAATAGCTCCAGGGGAAAAAGGAATGCTTGATGTTTTGGAAAGATTTGAGCTGGGAAGTGCAGACAGAGGCCATGGGGCGTTCTTACCACACAACCAGCCTCAGCTTCCTGACCCCCAGGGTCTTTGAGGGACTTAGTCCATCTCCAGGCCTGCTGCTTGCCTGCTCCAGAGTGTGGCGCTTACCTAGGGGAATGGTGAGGACCCTGGAGGTGGGGGAGTAGGAAGAGACTTGAAGATAGGGCAGTAGCCTTTCTGTCTGCACAGCCAGGTGACTCCCCCCACAAACAGCCAGCATTTGCAGCTGGAGGGATTCTGGGGCTTCATGGGCGGGTGAGGGCGAGCCTTGTGGAATGTGGCCCAGAGTGAGAGGCCGCCAGTGGGCGGGTTTTTCCCATGCCCGCACTCAGGGGCCAGGGAGTAGCACGTCGGTTGCATCCGTGACTCCAGCAGAGGCATCCGCTCTGCTACGTGGGTGGGAACAAGCCCAGTGCCCCTCCCTGGTCCAGGGAGCCATGTTGGATACCCCAAAAAAGGAAAGAAAGGACAAGACTTTATTCCTTAGCCTGTTTCTTTTTCTTTTTTTTCTCCTCCTCAACAGTGTATATAATAGGTTCTGCTTTTTAGAGTTTGAGCTTTTTGTTTGGGGGATCTGGAGGAATGCAGAGATGAGGCTGTTTGCTCTTTCCCCTCCACTGGGGGTCCTGCATTCTGGTACCTCCTTTCTTGTAGACCCAGGAGGAAGGGCTGGCATCGCCTTCCTGAGACTAGACAGTGCACAGCCCCTGGGTGAGATGAGCTCAGAGTCAGCAGGGGCCTGGTGGGCTTGCCACACCTGGCTGGTGGGACAGGGCAGGGGCATCACTCAAATTCAAAAGAAGCCACTTGAGGGCAGTAAAGGAAATGCCGGCGTGCGCTCAGGCAGGGCACACGTGGAGCTTGCTAGTGGGAACCAGGGCCACTCTCTAGAAGCTGAGCAGGCTGGGGGCGGTTTCCAAGGCATCCATGCATTCTGCCTCTGTGACCTTTCTAAGCGGGCGGTGGGTCTGTCCCTACCCAGGGTTAGCCAGGCACGGGGCAGGGCTCCAGTCTCCAGTGCCGTTCTTGTGCCCATCAGCCACCAGGGCGCAGGAGGTTGGCTCAGTCTGCGGTTCTTCTGTTCTTGTGACTTAAATGGTACATTCCACACCATTTCTCTCACACTGGTTTCTCTCTCCCTCTACGTAGGTCCTGCCTAATCATTGGACACGGACTCTTAATAAAACGGTCTTCAGTTCCAGATTCCTTCCCAGCAAGCTATAGCTTAAGTCCATTTTCTTCCGTGAAAGGGACAGGACTCCATCAAGTTATGGAATTCCTCAGAGCCCTGGGCCTGTCCCCCGGGGTGGATTAGTCATGTCCAGCAGCACACGCCTAGTCCCGCCTTCGGGAAGGCTGCCTGCCTGGCCAGCCGCCCAGGCCTCTCTGTGTAAAGACTGCCTGGCTGTCCTGCCCAGCCTTCCTGGTTCTCTGGGGTCCTCTGGGTGGGTGGCATCTCCTGGAGGGTGATGACAATCCCCAACACATGCATTCATGTGGTGCTACTCTGTGTGCAAAGCCAGACCCCAAGTATGTTTTCTCTCTTTGTCCCATCCCTCTTTTTCTGGGACTTTGGACCCTAACTACTTCCCTCCTGAACCTTGCAGTGACATCAGTCCAGGAGAGCTCTCGTTCAGTGTGCGGAAGAACACTCTGACCTCTAGAGCTGTCCTAGATAAGGAGTGGGAGCTTTAGAGGCAAGGCCTCTAGACCCTGGAAGGCTCAGTGAGGCTCTTCCCACAGCATGCTTCTCACTGGTGCCCTGTAAGGCTCGAGCCACCGCTGACTCTGAGCCTTTTGGAGTCTTTCCTCCTTCGTCTCCATTGTTCCCGTGCATTTCCAAAAGCTTAAGTTGCCTGGTGGGCATTTCCCCAGTTTCTTTGGCCTCCGTCTTCTCAAGTCACATAGGGAAAGTACCTCCTGGAACCAGGCTGCAGTATGCAGGACCTGCCAGGCAGGCACTGGTGAAGGGCCTTGGGCCTATCATCCCCCCAACCCCACCTCACCCCACCCGCCTCCTCTAGTGGGGTGAGTCTGGGCTGGTGGACCAGAGAGGGTGTCACAGACCCTCAGGGACTGCCCCATGGACACCTCTGACTGGTGTTAACAGTGTGAACATTTTCCCCGTCTTCAGTCCCTTAGAATGACGACAGCCCCTGGGGTTGGGGCAGGCGAGTGTGGCCACATCATCCAAGCCCTCCCAGAGACACAAATAGGCTTTTTTGCTCTAAAAATAAATACCAGCCCTTTTTTGGTCACAAATCCAGCATCTCAGCAGAAAACTGCCTGACATGAAAAGTCCCCTGAGGAACTGCATCTGCGTTTCAGGGGCTTTTCATTTTTTCTCCTTTTTTAAAGTGTAGATTGTGGGTGCTTCCTAGAGGCCTGCCTTCTTCTGGAACTGGAAGTGGGCTATCACCATGGGCAAGCCCTTGGGTGCAGGCTCCCCACCTGCCTGGGAACTCTGGCAGCTCTCCTCAGCTCCTTGGGCTTGAGCAGCTGCAACTGCCCCAGATTTGCTGTGGAAGCAGGGGCTAGCCCTGGCCTCACCAGGGCCTCCCGGGGCCCTGCATTGATGCTCAGGAGTTCCTGGGCTGCTCTTGATCCTTTCTGGGCATCCAGCTTCCAGTTAAGCTCTGTTTGCCAAACAAACTATTCTCAGCTGCCCTTTGGCCTGCGCCTGATGTGTTCCTGTTGCAGTCCCGCCTGCCTGAGACAGGAGCAGGCAGGAGAGCCTTCATGCCCAGATTCCCACAGGACAATTGGGGAGCTGCTGGCATTGTCTTTCTGGGAAGATTCTGCTTTCTTGGACCAAATGGCAGCCTGATTACCAGTGTCGGGCCTGCATGCTGCCCCCGACACACGCACGCACGCGCACACACGTGTGCACATGGGCCATAGCCACAAGCCAGCTCTCCTCCAGGGTCCTTTCAACCTCGCTGTCCAGGGACCCTGTCCTTCTTGCCCGTGGGGCTTCCATCTGGCAGAGAACGTTCAGGGCTTGTTGAACTTGAAAGCTCATTAGACTTAAGCTGTCACCTGTGCTTGGTGCCCCAGGAACAGCCAGAGAGGACAGTGCCCACTCACTTCTTGTTGGCAGCCTCCTGTGCAGGAAGTGCCAGCCGGGCCTCGACGCACCAGCTGGCTGTGGGTCCTGAGGAGGGGCGGGAGGCGGCCGCTCAGTGCAGATGGGGACTCCTCTCCTCTGCCCTGACCTTACCCTCCATTACCTCCTTCACTGGAGTGGGGCTGGGGGGTGGGTGGAATCAGTGTTTTAATCGGATTTTTAAAAAACATTTTATTTCTTTGTACAATTACCATCCTATGTAAAGATGAAATTTGTGTTGAGTTGAAGATTGTCATGGAATAAAGATCACACCGTACTTGAGGCCATCTTCATGTAACCCTTTCTAGAGAGTTTTGTGTGGGGGTGTCTTGGGGCTGGTGTGTTGTGAAGCTGTGCACTTCCTGTCTTGTCTTTTACTGGTAACTCTGACACAAGGCTCAGACCACATGGGCCAGAAGGGGGTACCTCTACCACCAGCCCCTTTAGGCATCTGGTCCTGGGGGTCTGCCGTGCACATGCCGCCTTCTCTCCCCCACTTTTTAGGCCTGCCTTGCCTGGGGGCCCCAGCACTTGCAAGGGGCCCTGGAGACAAGTCCTCAGGATATTCCCTGTGGCCTTTCCAAGGCAGCTGAGACATGCCCCCTGGAACCCCCCACAGGCCCTGCTGCGCTTTGTCCCTACATCTTCTCCTATGGGCCTCTGCTCACAGCCTGCAGGCTGTGAGGGGTTAGAGTGACCATCCCTCTTTTACAACCAAAAAAACAAGGTTTCTTCCAAGGCCACGAGACAACAGGCGAGCCCCAGCATATCCTTCCCTTGCACACACACTTTTTCCCTCAACTCTATATCTGGACACATCCCTGAGGCTTCTCCTAGTCGGACTTCACACGGTGGCCCTGCTGCTTCCCCCTACCTTCCGCCTTCTGCCCCGGGTCCCCTCCAAGGTGTGCCCAGCATGCCCCCAGACAGCGCGGCTCCATCACCTCCTTGTGCCAGGAGAGAAGCCCTGGCCTTTTCTTCCCAGTTCCCTAGTGTGCAGGGTCCCCCTGGTCCTGTGGCTGCCAACCTCTGCAGCCAGCGCTCCTCCCCCCACCACCACAGCAGTCAGACTCCCTGTTGCCCTGACACTGCAAATCTACTCAAGCTTTCCCTTCTGGCATGTCTCACCCACAACAGTATCTCTCTCATCAGATGTCATACTCTGACCCAGAGCGTCCTGAGCCCTGTATGCAGGTTTTAGGCGGGGCCCCAGGTTCCCCCGTGTCCCCAGTTGCAGCCCCTGGTCATTTGTACGAGGACGTGTGTCTGTAGCTGCTGAGGTCTGTGTCTGTGTCTTGTCTGGCGTGGAGTGGTGAGCTCTTACAGGGCACAAGGTCCTTCCCCATCCCTTTTGGTGGCATGCTGCACTGAGGGCCACGTGCCTCACAGAAGCTTAGCGTGGCCCTCCACGAAGCAGATCCAAGTGGAAGGAGCCTGGATTTGGGCAAAGCATGTGTCCTCCAACACCAGCAGCAAGAGGCAGCACCCTGACAAGGAGCTCAGGCGAAGCCAGGCAGTGCCATGAGGTGCTTCTCAGTGACAGGAATCCAAAAGGCGCCATACCATGGGCCCGGCCTCCCATCTGGTGGCAGGCGACTGTGACCTGCCAGCCCATGAGCACTGGCCAGGGCTCATGTCCCCCTGTGGGGCTTGTACACCATCCATGTTTGGTGAGGGGACATCCAACTGGCAAAAGTCCCTTAGTGTAAATCTCTGGGGTGAGGACAGAGGTGGGCACGCTGGCTCTCGAGTACACCTCTCAGGGGCAGACACACCCTGGACCCATCCACCCTACTGTGGTGCCAAGCCGTCGGCCCACACGAGTGGGGGCGTATGCTGCCTTCTGTCTGCAGCATGGTGACTGTGTCCCAAAGCAGGGACTTCTGAGGTCCATCTACCTCTTTAGTAGCTGGTCATTCCCAGGAGGCCAGCCTGCTCCTTTTTTTTCTCCCGGAGTGGGCTCTCTGTGTTTTCCCTTGCCGATATGTTCCTCACCGTCCTGTGGCTCTCAGCCCCAGCTGAGCCTCTCTGCTTCCCTTTGGAGGATGGAAAGGAGTGGGCCTTAGAGGGCCATGCAGTTGGAGGCCCCCGAGAAGCTGCTTTTTAGCCATGTGACCCTGGACAAGTCCCCTCCCTTCTGAAGCCCCACTTTTCTCAGCTGTAAGATGAATGTGACCATTGCAACCATCACAGGTTGTTGGAAAACTGAGCAGGTTGCTGTCCAGGCCATGCACTCAGTCACTATAGTGAGTGACTGACCCTTGAGTAGTGGGAGGCGTTGGGCAAGCTCTCAGCTTCCGGTGCAACCGTGGTGATCTGAAGCTTGGCAGGGGAGGCTTTTTCAGGCACAGTCCCTGCTAGGAAAAGCAGCAGGCAAGTGGGTAGGTGATGCCTCGCATGTCTCTCCCTCTCCCGTGATGACCAACTCATCCCTCATTGAACTCGGCTGCCCTTTCTCAGGGTCACTGGTCCTTCTCCTGAAAGTGCCCTGTTTTCTCGTCTTTCTTCATCCAAGGCCAGCTCACTCACCTTCTCCCCCAGAGCCTCACTACCTTCTCTTTTCCTCTGCAG
Seq C2 exon
AGATGGCTCCGAAGTCAAAAAAGAAGGGGCACCCCGGGAGGGAGCAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141867:ENST00000263377:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.961 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development