RnoINT0026406 @ rn6
Intron Retention
Gene
ENSRNOG00000006770 | Brd4
Description
bromodomain containing 4 [Source:RGD Symbol;Acc:1307282]
Coordinates
chr7:14230481-14239274:-
Coord C1 exon
chr7:14239164-14239274
Coord A exon
chr7:14230534-14239163
Coord C2 exon
chr7:14230481-14230533
Length
8630 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGC
5' ss Score
4.9
3' ss Seq
ACCTTTTCTTTTCTCTGCAGAGA
3' ss Score
12.3
Exon sequences
Seq C1 exon
CTGAAAAAGTTGATGTGATTGCTGGTTCTTCCAAGATGAAGGGCTTCTCATCCTCTGAGTCGGAGAGCACCAGCGAATCTAGCTCCTCTGACAGTGAAGACTCTGAAACAG
Seq A exon
GTTAGCTGGCTCCTGTCCAAGCATCTCATCAAACTACCCTGCGCATTCATACCTGCTACTCTCTCAGTCCTTTGTCTAGGCTGTTTAAGAGCCCAGAGTTGATGGCCACTGAGAACTGCCTGAGCTCTCCTGTCTACCCGTGCATCATGTTAACCTTCCCTCTCCCTGCCCTGTGTAGGAGCACTCTATTCTCTCCATCTGGGTAGTGGTAGACCTTGAGGACTGCAGGACTGTTGTTGGGGTCCCATCAACATTGGGCTGGAATGTCCCCACTCCTCTTCCAGTATTTTAGCCTTACAGTTGGCATGGAAACGAATCTGGCCACATTTTAGCAGAGTAGAGCCAAGCCACCTGTATCTGACATCCTGCATGATCAGTCTGTTTGGAGCCTGACCTTGAACTATGGAAGCTGCCGTTTTCTTCACAATGTGCTCACTGCTGTTTTGTGTTGTCTGTCCCCAGATTGCTCTAACTGTATGTGTGTCCTGCTCTTCCTCTGATCCTTGTGCTCTGTGGGCCTATATCGTGGTGTTCAGTTTCTTTGTTCTGAGCACCAGTTACAGAGCCTGCGGTAAAGATGGGAACAGGTTTCCTTCCCAGAGGTGCACTCTTCTTTGTTGTTCTCAGAGGAGCAGGTACTCACATTGGCCTCAAGGGAAAGGTATGCTGTACCTAGGTTGTCTGACACATGGCTCCTGTGGGCAGGGCAGGTTCTATTTGCTGAGAATATCGTCCACCTATGAGCCTGCCCTGGGGCCTCACGAAAATGGGCTAGGATGTGTGAGTTCTATAGTGAGCAGAGGGCCTATAGGGCCTGTAGACAAAAAGGCTCCTGGCAGTCTTCCATGGATCTTTGACTTGTGGAGTAATCACCTGATCATGGAGAGTCAAGGCTCCCTTTCAACAGCGAGGATGAGCTTTGTTATTTCAAGCTGTACACACAGAAACTGGAAGCTAGGTTGGAAGAGACATTTTTGAATAGGCTTTGGCCTTCCCAGTTCTCTGTATTGCCTTGTTTTGATGAGCAATGTATTTACAAAGAAAATGTAATCTACTAAATGGTGTGTATGTGCAAATTGGCTGGTCTCACAACCTCCCCTATTTTTTCTTTTTCCCTGTTCATTCTAAAACACCTTGCCTCAATTTCCCATGAACCAGCAGGGGGAGCTGCATCCTAAGCCTGCCGGGAAAGGCTGGCCCTGAGCCATTCCTTGAACTGGGGCCACTGCCTTCAGCAGGGTGAATGGGGTGAATAGATGTATTCTTGGGGCTCCATTAGCATTCTTGTTGGGCACTGACTTTTCACTTTCATTGCCAGCCAAGCTTTAGATTTGCCTTTCCTCTGTTCTCTCCCCCCCCTTTCTCCCTCCCTCCCTCCCTCCCTCTTCTCCTTCTCTCTCTCTCTCTCTCCCTCCCTCCGCCCTCCCTCCTCTCTCTCTCTCCCTCTCTCTCTCCTCCCCCCTCCGCTCCCTTCCCCTCCCTCCCCCCTTCATCTCTCTCTCTGTTCTCTCGGTCTCTCCTCTCTCTCTCTCTCCCTCTCTCTGTCCTCTCTCCCCCCTCCCTTCGTCTTCTTCTGGGAGGGGTGGGGGTCCTGGTATTTTCTAATTGTCCCTCCGGAATTTTGCACGCTTCTTCTAAAATCCAAGTGTTTGACATGACAACCCACGATGAGGACCCTGACGAGGAACATCCTGGCTGCGCGTGGGGATCTGTAGGGACTCGGAGGTCCCTCACACACAAGTAGTTTTGAGCACTGCCCCCAAACCTCTTCGTTGGGGTGGAGTACAATGGTCCTGGGGTCGCCACATGAGTGCACCTGCATCTACTTTCCCTGATGGCTGTCCAATGATGACATTTCCAGAAGCTTTGTGGCTACGTTACAGAAAGAAGACCCCCCCCCCCCCCCCAACCGCCTCTCACTTAAGTAGAAAGCTTGGGCAACAAGTAATCTGAGAGTCCTGGGAACAGCTGTCTTGGCGGGAAGGAGGGTGGAATTTAAAGTCATGGAGCTGCTGACCTGCAGCCTTTTAGGCCTTGGCTATGTAGTCCTGACCATTTTGGCCGCCTGGACGGAGCCTCTCCTTCCTTCCAGATGATGCTCTTCCCATTTTTGGCTCCCACTTGTCTTCATTTCAGAGTGCTGTGTTGACAGGACTACTTAGGAAGGACCTACTAACATTTCTAGAGCCACACATAGGACACACAGAAGGACATGGATGTGCATGGACATATGATACACCAGTAAAACAGCTTCTGTCTCCTTATGCCACACAGACACTGCACTTTGTGGAATTTGGAATACAGAAGTGGACATATCCTCTAGTAGCTGATATCCTAGGTCCAGGAAGCCCAGCAACTCCAACCTCTGTAACAAGTCACTGGTAGTGCTACCATGGCAGGAGACCGTGATGGAGATGGAGTAGACACAGAACATGTTTTACTTTGGTCTTTAGGTCTAGTTTATGTTTTTATTTTTTACTTGAAGCTAAAATTTCTCATGGGACCTATTTTTGTCACTTGTACTAAGGGTCAGGTCTACTGGCATGGCCCTAGTGACACACATCATCTAAAGCACTGAAGAGCAGCACTCAGCAGGGCTAGAAGGATATACAGGGATGCATAGGGTTAGACCTCGCTGCAGATAAATGGCTGTGATGCTTTACTGTGTGATTCCCTCATTTCCTGCAGCAGCACCAATGGCCCTTCTTGACATTTCTCTTGAGCCCAGTTATTTGTAGTTGGGCTGTTTTGATTTTCACTGAGCTTTGATTCTAACTTGAGTCTGGAACTGCTTAGGGGTTCAGTGTTAGAATAAAGAGAATAAGGCCCAGATGCAACTCCCTTCAGCTTCTAGGAAGTCTTCAAACCTGGGCTAGGCAAGTCAGGGGTGGACGCTATGGGTCTCCTTTCCTGTTACACCCCAGTCACCAGCAGAGGATCAAATCATCCCTCTTATGGGGTAAGGGATGTCCTAAGACTGTCTTGGTTCTTCTCAAATGTTTTTCACAGGTCTTTTTAAGTATAAGTAGCCACATAGCTGATTGTGTACATCCCCTCTGGAGCCACCCCTATAGTGCACCTCATCTGTCTGGGCTGGAATGGGTTTGGAGCCACACAGAGAGAAGGCTCTGGAACTGCAGCCTGTTCATGCAAGAGCACAGTCCAGCTATTTTAGTCTTACTTCCTTTTCCCAGGATTGGAACATGTGGGTGTTCCTTAATAGCTCCAGGGTAAAGAGGAATGCATGGTGTTTTGGAAAGGCTGGAGCTGGGAAGTGCAGACAGGGGCCATGAGACACACTCTAGAGGCTCTGATCAGGAAGCCAGCCTCAGCTCTCTGGCCCCAGTATCTTTGAGAGATCCCCTTCAGTCTTATCTCAGGGTTATAGTGGTCCTGCTGCCAGATTGTGACAATTACTTCAGAAAGGGGTAAAGCCCCTTGAGAGTAGGAAATGTGCAGAGCCAGGTGGCATCTCCAGAAGCCCAGGAGTTTGAAGGAATTGATTGGGGCTTCCCTGGGGTGAGGGCCAGCTTTGTGGAATGTGGCCTACAGTAAGAGGCTGAGTGGGCGGGGTTTTCCCAGGCATGTTCTGGGAGTAGGGATTGTAACATTTATAATTCCAGCAGCGGCGCCACTCTGCTACATGTGGGAACCAATCCAGACCCCTCTCTGGACTAGAAGCCATATTGGATGTCCTGAAAAAGGATGGAAAGGACAAGGCCTTTTCTCTTTGGCCTCTGCCTTTCCTCAACAATTGTTACTGTCACCAGTTCTGCTTTTTATAGTTTTCTACTTTGGTTTCGGAGCTAGACAGAGATGGCTCTGCTCTTGGCCTTCCTCGGTGGGAAGTGCTGCCTCCTTTGCTGGGCTTTTCTTCCCTGACCACACTATGAGAAAGGGTAGGTAATTTTGCTTTTCTGAAGAATGGTTAGCTGGTTCCTGGTGACTTTATTAACACACCTGGCTGGTGAGATAGCTTTGGGGGTGGGGGGGCACCTCCTGTAAGAGAGACTTCAGGAGTAAAGAAAATACCAGTGCACTCAGGCAGGGCACATGGAACTCATTAGCAAAATCAGGTTTGTTCAGAAATGCAGACAAGCTTCAAGCAATTTTAGAGACTTCTATATACTGTGACCTTCCTATGGTGTAGATTTATCCATCCCTGCTGTGGCAAGCCAGTTGAGGATGGGGCTCTTGGTTTCCAACAAGGTCCTCTTGTGCCCTTTCAGTCACTAGGGCACAGAAGCTGGCTCAGTCTGCAATTCTTCTGTTCTTATAACTTGAACGGTACATTCCACACCATTCTCTCACACTGGTTTCTTTCTCCCTCTATGTAGGTCCTGCCTAATCATTGGACACGGACTCTTAATAAAACGGTCTTCAGTTCCAGATTCCTTCCCAGCGAGCTATAGCTTAAGTCCATTTTCTTCTGTGAAAGGGACAGGACTCCATCAAGTTATGGAATTGCTCAGAGCCCTGGGCCTATCCCCTGGGGTGGATTAGTCATGTCCAGCAGCACACACCTAGTCTCACCTTCAGGAAGGCTGCCTGCCTGGCCTGCTGCCTGGGCCTCTCTGTTCAAAGACTGCCTGGCTATCCTGCCCAGCCTCCCTGGTCATCTGGGGTCCTCTGGGTGGGTGGCATGTCCTAGAGGGTGATGGTTGTCCTCCTCTATGCATACATGTGGTGCTGCTCTGTGTGCACAGCCTGATCACAGTGTGTTTCCTCTCTCCGTCCCTTCCGTCTTTTTCTGAGACTCCAGACCTTGCAGTGACTTTAGCCCAGGAAAACTAATTCGCCCTGAGGATGAACATTTTGGCCTCTTGTGTGGGGCCACCCTGGTTGGCTTGATCAGATGGAGGCTGTGTCAGCTTTAGCTGACACACAGCCTCCTGAATTCTCCTTCAGTCTCTGCTGTCCCCACAGAGTACTAAAAGTCAAAGTGGCTAGTGGACATTCCCCCGAGTTCTTTGGTCTTCTCGTCACATGAGAAAATACCCTTTAAGGTTGCTGGTGAGGGACATGCAGGCACATTAGCCCCACTGCCAAGCCAGGTCAGGATCTGGGAAGTGGGCAAGAAAGATAACATGGCTGCTAGTGAACTACATACAGTGCCTCTCCAAGTCCCACCACCATCACGGCCATCCTCATCTTTAGCTTCCTATAATGACAGCAGCTATTGAGGCTAGACCAGGCAAGAACAGGCCATATCATCCAAACCTTTCCAGAAACAAACCGTAATAGGCTGTTTTTGTGTTTGGTTGAGACCTTTTGTTGTTGTTGTTGTTGTTTTATTATGTTTTTCCTCCCTAAAATCTGGCCCTGGCCCTTTTTTGATCACAAATCTAGCATCTCACCAGAAAACTGCCTGACATAAAAAGCCCCATTTTAATGGGCTCTTTTTGTCCTTTTTTCTTTTAAAACGTGCTTTTATGTATTTCTGAGAGGACTGTCTCGGACACCTTGGAGCCTGTCTTCCCTGGGGCTAAGATGAAGCTAGGTGGTGCTGTACCCCTTCCCAGACTCCAGACTTCCCTTACTCAAGGGTTACTGGCTATCCTAGATCTGATACGACGGCCTTTGGGTCTCAGACTCCCTAGAATACCCAGTGACCCCAAGATGATGCTGCTGAGCACAGAGACCATTCTAAATCCTCTGTGTATCTAGTTTCAAGACAGCTCCTTTTGCCAAACATACTATTTTCAGCCGCCCTTTGGCCTGTGCCTGACGTATTCCCAATGAACTTGGCTTGGCTGGAATTGGGGGAAGGGGAGGCTTCTTGCCCAGAGATTCCCACAGGACAGTTGGGAAAGCTGTTGGCATTATCTTTCTGGGAAGATTTTGCTATCTTGGACCAAATGATGGCCTACATTCCCACAGTATCTTGGCTATGTGCCACCCCTGCCCCTCCCAACACTCTGTCTACACGTGTGCACACATATAGGCATCTTGCCCTGTCTAGTACTCTTTGCTGTCCTGAATCCCAGCCCTGGCTGTGTGGGCCTACTGTGTGGCAGGAACACTCAGGACCTGTTGAACTTGAAAGATCTTTAGACTTAAACTACCGATTGTACTTGGTACGCCGGGAATACAGCCAGAAAGGACAGTGTCCCACCTGCTCTTCCTTGTTGGTAGTTTTCTGTTCCTGGGCAATGGGAGGAGGTCCCTTGGAAAGCCTTAGTGTACCAGCTGACTGTGGGATCCTGTTGGGGAGCCAGCAACAACAGTGGAGGGCTTCTGTCCTCCATTGCCCTGCCCTCAAACCTGTCTCCTTCATTCAAGTGGGGCTGGGCTGTGGTTGAAGAAATCAGTGTTTTAATCAGAGTTTACAGAAATCATTTTACTTTGTACAATACCATCCTATGTAAAGATGAAATTTGTGTTGGAATAAAGATCACACAGTATTTGAGGCCATCTCCATGTAACCCTTTCTAGAGAGTTTTGTGTGGGGGTGTCTGGGGCTGCTGTGTAATGATGCTGTGCACTGACTGTCTTGCCTTCTTACTGGTAACCAACACAAGGCTTGGGCTATAGGAGCTGCATAGGACTGCCTCACAACACATTTCAGCTCCACTAGTTAGTCTCACTGGGGCCCAGAGGGCCGGCTGCCTTGTAACCTCCACTTCCACTCTGAAGATGAATCCCCAAATACTCCTGTGACCTTTGCAGTGCAGCTGAGATATTTCCTAGAACTCCTCTGCCCACTGCTCTTGGTCCTAAGCCTAGTCTTGTAGACCATAACTTGAGGTAGGTGGTGAGAGGCAGGAGCCATTTGTCCCTTTTATATAAGTTAGGAAAACAATGTTCAATGTTACTAGACAAGAGGAAGCAAGCACCACTTCCTTCCTAGACATCTCACCACTCAGTTCAGCGTCTGGGTGCCACCCTCAAGGCTTTTCCAAATCACATTGGACACAGTGGTTTCAGCTTCGTCTCCTGGCTTCTCTGTATGCTGAGATCCCCTCAAGAATATCCCTAGCGTTTTTGTTATCTCCCTGCTTACTCCATGCTTCTTACAATGACACCAGAAAAGCTAATAGAGGAGATTGTCCAATGGCTGTTCCAGCCCCTCTCTCTCCCCCACTACTGAATTACTGGCGCTCTGGCTGTTGTGTGTCCCCTGTCATTCAAGTCCTTTTGATGTGAGGTCTCTAGGTAGTGCTGTTTCTACATTTTAAATAGCCAAATGCCCTGCCCTGATTCTACAAGTCTTTCCAACAACCTCCTTTTGAAGGTCTTCCTTTTAAGAAGCTCTCTTACCAAATTCTTCTACTGACCCAAGGAGTTATGAGAGCTCTGTTTCTGGCATCCAAATTTGGGGCTCAGCCTTGGGTTCTCATGTGCTAGGTGTCCTCACTTGCTGCCCTTTGTCATTTGTGTGAGGACATGTTTGTGGCTGCTGAGATCTGTGTCTGTTTTGTCAGTAGTCCTGCATGGAGTGGTGAGCTCTTGCAGGGTACAAGGTCCCATCTTCTGTTGGTAGCGTACTGCACCCAGCTATGAACCTTAACACTTAACAGCAAGAACTGGTGTTCTGACAAGGCACTTGGGGAAGGCCAAAACCAGGACACAAAAGTGATGCCTAGTGACAGTAATCTGAAAGGCTCTATACCATGGGCCCAGCCTCCAACCTGGTTGATTGGCATTTGTAGTATTTGTCAGCCCAAGAATACTGGCCAAGGTGTTATCCTTCCTTCTCCTGGAGTATCCAACTGGTAAAAATTGCTTATAAACTCTTAAGGTGGAGGCAGAAGTATAAACTTAGGTTTTTAACCAGCTTAACAGAGAAAGGCACATTTGCACACATTAAGCACTGATCTTCAGCCTCTTAAGGACCTTCTTCTGTGCACATTGACTGTCCAGAGAAGGGTGACTGACATCTGTCTTGCCCAAAGAAGAGAAAGGGTGCCAGTGCCATTTTCTTGGCAGTGACCACCTGCCCTGTTTGTTCCTGGTCATTCTGGGGAGGATAGCCCAATCCTTACTCCCAAAAGGTGTCCCTTTCTGCGTTCTCATTCATAGTCCCTCTCCTTTCCCGCTCTGGCGCTGGTCAAAGTTATGCTCAATGCCAGCCAGTATCACTGATCTTTCTCAGTCCCAGTCTCAGCTTCTTACTGTCAGGCAAGGACTGCCTCAGTAAACAGAGGCCCTAAACTGCGACTCAGCATTGTGGTCCTGAATAGTTGTCCTCACTTTTGGCTGGAGCCTTGTTCTCAGCTAGTCTCACCTGGGATCATTGCAAGTATCCCGAGTTACTCCAGAGCATGGCAGGTTATAATACAGAGTGTGCTGACACTCTCATCCCAGGTGTGACTCATGACATGGGGAGGTGGTAAGGTCTCTAGAGCTCAGATGCCGACATAGATAGCCAGGGCCTTTCCCTTTACTTGTGCCTGTGGTCTGGAGCTTGCCGAGGCATTTTTCAGGCAGTTCCTTAGCAAAGCTACAGAAAGGTAGGTGGGTAGGTGATACGCCACACATCTGCTCCTCCTCCCTGTGATGGCCCAGTTGAGAGACATTTTCAGTGTTACCAGCCCTTGTCCTAAATGCCCTATGTCCTTGTCTTCTGCATCCAAGGCCAGTTCATAATCTCTTCCTTGAAGTCTCACTACCTTTTCTTTTCTCTGCAG
Seq C2 exon
AGATGGCTCCCAAGTCAAAAAAGAAGGGGCACACTGGGAGGGACCAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006770:ENSRNOT00000008963:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]