MmuINT0025685 @ mm9
Intron Retention
Gene
ENSMUSG00000024002 | Brd4
Description
bromodomain containing 4 [Source:MGI Symbol;Acc:MGI:1888520]
Coordinates
chr17:32343624-32348222:-
Coord C1 exon
chr17:32348112-32348222
Coord A exon
chr17:32343939-32348111
Coord C2 exon
chr17:32343624-32343938
Length
4173 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGC
5' ss Score
4.9
3' ss Seq
TTTCTTTCTCCCTCTATTAGGTC
3' ss Score
11.61
Exon sequences
Seq C1 exon
CTGAAAAAGTTGACGTGATTGCTGGTTCTTCCAAGATGAAGGGATTCTCATCCTCTGAGTCGGAGAGCACCAGCGAATCCAGCTCCTCTGACAGTGAAGACTCTGAAACAG
Seq A exon
GTTAGCTGATTCCTGTTTAAACATCTTATCAAACTACCCCACTCATCCCCGGTACTATCTCAGTCCTTTGTCCAGCCCAGAGTTGATGGCCACTGAGAACTGCCTGGGCTCTTCTGTCCACCCATTCGTCATGTTAACTTCTCCCTGCAGAGTGGCAAGATGCCCAGTGTAGCAGCACTCTATTCTCTCCATCTGGGTAGTGGGTAGACCTTGAGGACTGCAGGTGTTGGGGTCCCATCAACCTTGGGTTGCAATATCCCCAGTCCCCTTCTAGTATTCTGGCCTTGTAGTTGTCATGGAACTACATTTTAGCAAAGTAGAGCCAAGCCACCTATATCTGACAGCCTGCATGATCAGTCTGTTTTGAGCTCTGTTGTCTGTAGCCTGAGCTTACACTATGGAAAATGCCATTTTTTTTCCTTTCCACAATGTGTTTACTGCTGTTTTGTGTTGTCTGTTCCCTGATCTGTTTTAACTACATGTATGTCCTGCTCTTCTACTTATACCTGTTCTCTGTGGGCCTATATAATGGTGTTCAGTTCCTTTATTCTGAGCACCAGTTACAGAGCTCTGGAGGTGAGGGCAGGTGGTAATGATGGGAACAGATTGCTTTACCAGAAGTGTACTTTTCTTTATTGTTCTCAGAGGAGCAGGTGCTCACATTGACCTCAAGGGAAAGATAGGGAAGAAGGCATGGTGTACTTAGGTTGCCTGATACATGGTTCACATGAGTGGTATTACCCCTGGGCAGGTCAGGTTCCATTTGCTGAGAAGATAAAGTCCACCTATGAGCTAGCCCTGGGGTCTCAATGTGTGAGGTCTATAGTGGGCCTGTGGAGGAAAAGGCTCCTGGCAGTCTTCCATGGATCTTTGACTTGTGGATCATGTCAAGGAAAGTCAAGGCTCCCTTAAAACAGCAAGGATGAGCTTTGTTGTCTCAGACTGTACACAGAAACTGGGAGTTAGAGGGAGGAAACATTTTTGTGGGCCATGGAGTAGGCTTGGGCCTTCCCTGGACAGTTCTCTGTTCTGCCTTGTATTTGATGAGGAATGTATTTACAAAGAAAATGTAATCCACTAAATGGTTTGTTCTGCATTTGTTCCGCAGCATGTGGAAATTAGATGGTCTCACAACCTCCCCTATTTATTATTTTCCCTGTTCATTCTAAAGTACCTTGCCTCACATTCCCATGAACCAGCAGGGGGAGCTGCATCCTAGGCCTGCTGGTCAGGGCTGGCCCTGAGCCATTCCTTGAACGGGGGCCACCGCCTTGAGCAGGGTGAATGGGGTGAATAGATGTATTCTTAGGGCTCCATTAGCATTCTTGGTGGCCACTGACTTTTCACTTTTATTGCCAGTCAAGCTTTACATTTGCCTTTCCTCTGTTTTCTCTCTTTCTTTTTTGGGGAGGTGTGTGTGGGGGGGTATTTTCTAGATTGTCCCTCCTAAGATTTTGCAGCCTTCTTTTCTAAGAATCCAAGTGTTCAAATGACAATCCCAGAGACTGACCCTAACCTGATGCTAAACATCTTGGCTTACCTTTAGGATCTTAGAGGACCCTGACCCCACACACAAGTATTTTTGAGCCACTGCCCCCATATCCCTCTTCTTTGAGTGGTAGTCCTCCTATGGTCCCACATGAGTGCCCTCCATCTGTCTTTCCTTGATGGCTGTCATGATGGCATTTCCAGCAGCTTTTTGCTACTGTTACAGAAAGAAGACTTTTTTCCCCTAACCCGCCTCCTCACTTAAGTAGAAAGCTTGTGCAACAAGTAACCCGAGAGCCCTGGGAACGGCTGTCCTGGCGGGAAGGAGGGTGGGATTTAAAGTCATGGAGCTGCTGATCGCAGACTTTTAGGCCTTGGCTATGGACCCTGACCATTTTGGCTCCTGGGCTGAGCCTCTCCTTCATTCCAGATGATATCCTTCCCATTTTTGGCTGGCCTCCACTTGTCTTCGTTCAGACCACTAGTTTTTATTTCCTACTATGTACAGAGTGCTGTCTTGTGAAGCTGTTAACATGAGATTTTGTTTTAGAACCCCACATAAGACACAAAAAGACATGGTCATCCATGGACACATGCATATACTAGCAAAACATCTTCTGTCTCCTCATACCACACAGGTACTGCTGTTTGTGATATTTGGAGTGCAGAGGTGGGTGAATACTCTAGTAGCTGATCTCCTGGGTCCAGGAAGCCCAGCCACCTTAGCTAGCCTCTGTAACAAGTAGTACTACCATGTCAGGAGGCCAAGGTAGAGATGGTGTAGACACGGAAGTTGTTTCACTTTGGTCTTTGGGTCTAGTTTATGTTTTTCATGTTCTTATTTTTCTACTTGAATTAAAGCTAAAATTTCTCATGGAACCTATTTTTGTTATTTGTACTAAGGGTCAATTGTACTACCATGGCCCCGGTGATACAGACCATCTAAAGCAACTGAAGAGAAGCATTCAGTAGGGGCTAGAAGGTATACAAGAATGCATAGGGTTAGACCACACTGACGATGAGTGGGTGGGATGCTTTACTGGCTGGATTCCAGCCACTGTGTGATCCTCCATGTGTAGCAACTGCACCAGTGGCCCTTCGTGACATTTGTCTTGAACCCAGTTATTTGTAGTTGGGCTGTTCTGTTTTTCATTGAGCTTTGACTCTAGCTTGAGTCTGGAACTGCTTACTGGTTCCATGTTAGAATAAACAGAATAAGGCCCAGGTGTAACTCCCTTCAACTTTAGGAAGTCTTCAAACTTGGGCGGGGAAAGTCAGGGTGTAAGACACTGTGGCTCTCCTTTCCCAGAACTCTCTCAGTCACCAGTATAGAATCAGATCATCCTTCATATGGGGTAAAGTTCTTTCATTATATTGCTAATATCTGGTTCTCCTCATATATTTTCCACAGGTCTTTGTGAGTATAGGTAGCTACATAGCTAATTATGTGCATCCACTCTGGAGTCACCCCTATAGTGTACCTCAGCTGCCTGGCCTAGAGTGGGATTGGAGCCATACAGTGAGAAAGCTCTGGAAGCGCAGTCTGTTCATGCAAGAGCACGGTCCAGCTATTTTAGTCTTACTTCCTTTTCCCAGGATTGGAACATGTGGGTGTTCCTTAATAGCTCCAGGGTAAAGAGGAATGCGTGGTGTTTTGGAAAGGCTGGAGCTGGGAAGTGCAGACAGGGGCAATGAGACACACTCTAGAGACTCTGATCAGGGAGCCAGCTTCAGCTCCCTGGCCCCAGGATCTTTGAGACTTCCCTTCAGGGGTATAGTGATCCTGCTATCAGAATGTGACAGTTACTTCAGAAAGGGTTAAGGCCTCTTGAGAGTAGGAAATGTACTGAGCCAGGTGGCACCTCCAGAAGCTCAGGAGTTTGAAGGGATTGATTGGGCTTCCCCAGAGTGAGGGCCAGCTTTGTGGAATGTGGCTGAGTGGGCGGGGTTTTCCCAGGCATGTTCTGGGACTAGGGATTGTAACATTTATAATTCCAGCAGTGGCGCCACTCTGCTACATGTGGGAACCAGTCCAGACCCCTCTCTGGACCAGAATCCATATTGGATGTCCTGAAAAAGGATGGAAAGGATAAGGCCTCTTTGACCTCTTCCTTCCCTCAACAATTGTTATGTCACCAATTTGCTTTTAATAGAGATGTGGAAATAGACAGAAATGGCTCTGCTCTATGCCTTCCTCAGTGGGAAGTTTTTTTTTTTAATTGGGGGCTTTTCTTCTCTGACCACTCTATGAGAAAGGGTTGGTAGTTTGCTTTTCTGAAGCTGGTTCCTGGTGACTTTGACACACCTGGCTGGTGAGATAGCTTGGGGGCAGTGGGCACCTCTCACATGTAAGAGGGACTTCAGGAGTAAAGAAAATACCAGAATACATAGTCAGGGCACATGGAACTCATTAGCAGAATCAGTTTTGTTTAGAAGTGCAGACAAGCTTCAAACAATTTTAGAGACTTGTACATACACTGTGGCCTTTCTGTGGTGTAGATTTATCCATCCCTGCCAAGGCAGGCCAGTCAAGGATGGGGCTCTTGGTTTCCAACAAGGTCTTCTTGAGCCCTTTCAGTCACTAGGGCACAGAACCTGGCCCAGTCTGCAATTCTTCTGTTCTTGTAACTTGAACGGTACATTCCACACCATTCTCTCACACTGGTTTCTTTCTCCCTCTATTAG
Seq C2 exon
GTCCTGCCTAATCATTGGACACGGACTCTTAATAAAACGGTCTTCAGTTCCAGATTCCTTCCCAGCGAGCTATAGCTTAAGTCCCATTTTCTTCTGTGAAAGGGACAGGACTCCATCAAGTTATGGAATTGCTCAGAGCCCTGGGCCTATCCCCTGGGGTGGATTAGTCATGTCCAGCAGCACACACCTAGTTTCACCTTCAGGAAGGCTGCCTGCCTGGCCTGCTGCCTGGGCCTCTCTGTACAAAGACTGCCTGGCTATCCTGCCCAGCCTCCCTGGTCATCTGGGGTCCTCTGGGTGGGTGGCATCTCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024002-Brd4:NM_198094:12
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: