HsaINT0020262 @ hg19
Intron Retention
Gene
ENSG00000178449 | C12orf62
Description
COX14 cytochrome c oxidase assembly homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:28216]
Coordinates
chr12:50505900-50514234:+
Coord C1 exon
chr12:50505900-50506084
Coord A exon
chr12:50506085-50513818
Coord C2 exon
chr12:50513819-50514234
Length
7734 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGC
5' ss Score
10.12
3' ss Seq
AATTCAATCTGTCTTTGTAGGGG
3' ss Score
8.2
Exon sequences
Seq C1 exon
GGAGGGAGAAAGTTGCTTTCTGCACCAATAGCTGAGGCGTTCAGGGTTGTCCAGGGACGCTACCCTCACGTGTCTGGTTCCGAGTGCTGCGTTCGGCTGTGCTGGGAAGTTGCGTAGACAGTGGCCTCGAGACCCTGCCTGCCTGAGGAGGCCTCGGTTGGATGCGAAGGAGCTGCAGCATCCAG
Seq A exon
GTACGCTGCCGGCTAGGGCCGAGCAGGGGCTGCCAGTCCCACTGCCTGCGCGCCCACCTGGGCCAGTCTCCGCTTGCCGCGTCCTCCCATCCCCTAGTCTGCAGGCCTGGTGCCCTTGAATTCACCCGCTTCTGTTGCGTTGCGGACCGCGAGCTGCACTGCTTCCTGCCCAAGCCCAAGCTCCTCGCAGCAGTAGGTCAGTCTTGCTAGAGCTCAGCGCTAATCCTGTCAAACCTCGACTCCTGCCTGGCGTCTCGACCCTCCACGCTCCAACTCTGCCTCTTCCTTGCTCTATAGACCTCTGCGTCCTGATAAGTGGCTCTCCGGGGCACCCTTCGTGCATATCGGCTATCCAGCTCCACCTCTTGACCGCTTTCACTTCCTGGAATGCTCTCACTGCTCCTCTTCTCCAGGCCATCCTTCTAAAAAGACAGTTCCACTCCCACCCCGATTCCCACCCCTACACCTTTCTGCTAAGTTTTCTCAAGCCCCCACCCTGTCTTTGAGCTGTTGTCTCTGAACTCTCACAGTGCCTCTCCATGAGACCATAAGCTCCTGTATGACAGAAGCCATGTTCTTTTTAGCGGCCTCCGTAGCATGATGTACGTTATGTTATGTTATGTTATGTTATGTTATGTTATGTTATTTTGAGACAGGGTCTTGCTTTGTCGCTCAGGCTGCAGGTGTGCGCCACCACGCCCGGGTAATTTTTAAAAAAAGGTTTTTTTTTTGTTGTTGTTGTTGTTGTTTTTAAATAGAGAAAAGGTCTCCCTATGTTGCCCAACCTGGTCTCCAACTCCTGAGCTCAAGCCATCCTCCCGCCTCGGCCTCCCAAAGTGTTGGGATTACCGGCGTGAGCCACCGTACCCGGCCGATGTACTACTCTCTAAGTGCCAAACAAAAAGTAGATAAAAGATGATGGATACCTTAAAAGCCCTGAGTTGACCACTATGCAGTGTATGCATGTAACAAAATCGCACTTCTACCCATACGTTTACGCAATTTTTTTTTTTTTTTTTTGAGACGGAGTCTTGCTCTGTCGCCCAGGCTGGGGTCCCGTGGCGGGATCTCGGCTCACTACAAGCTCCGCCTTCCGGGTTCATGCCATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGACTACAGGTGCCCGCCACCACGCCCGGCTAATTTTTTGTGTTTTTAGTAGAGATGGGGTTTCACTGTGTTAGCCAGGATGGTCTCGATATCCTGACCTCGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGTACCCGGCCGTTATTTTATTTATTTATTTATTTGTTTGTTATTTTATTTATTTTTTTGAGACGGAGTCTCGCCCTGTCGCCCAGGCTGGAGTACAGTGGCGCGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAATGATTCTCCTGTCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGTGCCACCATGCCTGGCTAATTTTTGTATTTTTAGTCAAGACAGGGTTTTATCATATTGGCCAAGATGGTCTCGAACTCCTGACCTCAGGTTATCAGCCCACTTCTGCCTCCCAAAGTACTGAGATTACAGGTGGCTCACGCCCAGCCTTTTTTTTTTCTTTATTATCATTATTATTATTATTTTTAGAGACACAGTCTTGCTCTGCAAGTGCAGGGCCGTGATCACAGCTCACTGCAGCCCCAAACTCGTTGGCTCAGGCAAGCCTCCCACCCAAACCTCCCTAGTAGCTGGGACTGCAGGTGCATGTCACCACACCCAGCTATGGTTCTCAATTTTTATTCTAGCCTAACACACTGGAAAGATACAGTACACCTCCATCAGTGGCAGTGACTTGATTCAGCAGTGGTTTTCAACCAGGAAGGGGGATGTAGTTAAATGAAAAAAAAAAAAAAAAAAACAGGTGTTTCTGGAATTTTTTTTTTTTTGAGGGGTGGAGTTTCACTCGTTGCCCAGGCTGGAGTGCAGTGGCGCGATCTCAGCTCACCACAACCTCCGCCTCCTGGATTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGTGCCACCCCACGCCTGGCTAATTTTTGTACTTTTAGTAGAGGTGGGGTTTTTCCGTGTTGGTCAGGCTGGTCTCGAGCTCCCAACCTCAGGTGATCCGCCCTCCTCGGCTTCCCAAAGTGCTGGGACTACAGGAGTGAGCCACTGCGCCGGGCCTTGGAATTTCCTACCTGCCTTTTCTCCTTAATTGTTGCCTTCTTTGAACTGTTGCTCCCTTGGCCTCTCTCTTTCTGGTCTTATCCTCTCCTTTGGTTTTGCTTATTACCTCCATATGTATCTGAAACATAGCTTCCCTTCTAAGCTGTATCTATCTAAATTTGTATTTCCATCTGCCTGATAGACATCATCACATGAATGTTGTGTTGAGTATCTTAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCACTCTGTCGCCAGGCTGGAGTACAGTGGCTGCAACTTCCGCCTCCTGGGTTCAAGCAATTCTCCTGCGTCAGCCTCCAGAGTAGTTCCGACTACAGGCAGGCGCCACCATGCCCAGCTAATTTTTGTAGTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGATGGTCTCAATCTCTGGACCTTGTGATCTGCCCACCTTGACCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCCGGCCGGTTTTTTTTTTTTTTTTTAAATAGAGATGGGGTCTCGCTGTGTTGCCTAGGCGTAGTCTTGAACTCCTGGGCTCAAGCGATTCTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACCAGTGTGAGCCACCATGCCTGGCTGAGCATCTTAATTTTTTTTTTTTTTTGAGACGGAGTCTGGTTTTGTTGCCCAGGCTGGAGTGCAGTGGCGCGATCTCTGCTCACTGCGAGCTCCGCCTCCCGGGTTCATGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCACCCGCCACCATGCCCGGCTAATTTTTTTGTATTTTTACTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCTTGAGCCACCGCGCCCGGCCGAGCATCTTCATTTTAACGTGTTCAAGCCCAGCTCATGATCCTCCTTTTTTTTTTTTTGAGACAGGGTCTCCCTGTCACCCAGGCTGCAGTGTAATGGCATGATCTCGGCCCACTGCACCTCTACCTCCTGGGCTCAAGCGATCCTCCAACCTCAGCCTCTTGAGTAGCTGGGACTACAGGTGCATGCCACTACGCCCCACTAATTTTTGTATTTTTTGTAGAGACAGGGTTTCACCATGTTGCCCAGGCTGGTCTCAAACTCGTGGGCTCAACGATCCGTCTGTCTTTGCCTCCCAAAGTGCTGGCATTACAGGTGTGAGCCACTGCACCGGCCACGTGATCTTCTTGATGGACACTGTCACCACCCTGTATATACAGTGATACATACCTCTTCTCTTGTTTCTTATTTCTGTTAACAGTATCCCAGTCTACAAAGTTTCCTAACTTGGAGGTATTAATATTTTCAGCTTTGCCCTAATTCGCTCCATTGATAAATCCTTTTCTACTTCCAAAGTATCTTCTGCATCTGTTCTTTCCACTTCTACTGCTACCACTGCTTTAGCTCAGAATCTGAAGAGTTTTTTTTTTTTTTTTTGAGACAGAGTCTTGCTCTGTCCCCCATGCTGGAGTGCCGTGGCACTCTCTTGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGTGATTCTCTTGCCTCAGCCTCCTGAGTAGCTGGGGCTACAGGCATCCGCCACCACGCCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTTGCCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCTGCCCGACTCAGCCTCCCAAACTGTTGGGATTATAGGCGTGAGCCACTGCGCCCGGCCTGAAGAGTTTTTGCTAATTGGATATTAGGGAAAACCACAGGATGGATTAAGACAAGAGAGGGAAGGTAAGGTTCTAGACAGCAGGATTATGTCTGTTAGTTGGTTTTATGTCACTTTTCTAGCCAAGCTGTACCATCCTGTTTTTGTTGGTTGGTGAATGCTTCCAGCTCTTTTCCTCCAGCCCTTGGAAGAGGTGGTCCTATAATTGTTAAGCATCTAGCTAGGGTGATGAGTAGGAATAGCAATAAGTGACAGGGAAGTTGAAGGCTGCAGGGCTCTTTGCAGGCGGCTTAGCGTTCAGCTCCATGGGTGTGTGTTTTGTTCACTATTGCATGCACAGCTTGGGGCCATTTCAAACCTCAGATTTCAAACCTGAACACAATCCTTTCTCATCTTGAACTTGTGTCACTTAGTATTCTTCCTCTGACCTTACTTAATATCACTTTCCATAGTGGGATTATATTTCAAAGAAGCTGTGTCTCAGCTCAGCTTGGGGTCCACACTCAAGACCTGCCTCAAAGGCAATGTTCAGCCCTTAGGGTTTACTCTGAGAAGTATTTACATGTCTGTACCCATGTCTGACCCCTCTAAACCAGCGAATCCTGAGCTTTACTTTCAATTTTTTTTTGTTTTTTGAGACAGGGTCTCACTCTGTCACCCAAGCTGTAGTGCAGTGGTACGATCTCAGCTCACTGTAGCCTCAACCTCCTGGGCTCAAGCAATCCTCCCACCTCAGCCTCCTGAGTAGCTGGGACTACAGCCATATGCCACCATGCGTGGCTAATTTAAAAAAAAATTTTTTTTGTGGGGACAGGGTCTCACTATGTTGCCCAGGCTGGTCTCAAACTCCTGGCCTCAAGTGATCCTCCTGACTCGGCCTCCCAAAGCATGGGATTACAAGTGTGAGCCACCATGCCCTGCCTAGGTTCTTGACTTTGTTGTTTGTGTGTATGCTTTGGTGTGTGTGTGTGCGTGGCCATGGTAAGGGGCGGGATTTTAAGTGTCTCTGCCTACAGTGCTGAGAGCCATTAAGTGGAGAGCAAGCTGCCAAAAACTAAAAATAGGGCCCTCTTAGGCCTCACTGGCAGGCTTATTGGGCCCAGTTCTCTCAAGGCTCCTCAGGACTGGGTCCAAAGGTCCTTGAGACATTCCCCTCTTGGCTTCCACCCTGGCACTCTTTTTCTGTCTCTTTTTTTTTTTTTTTGAGACGGTGTCTCACTCTGTTGCCCAGGTTGGAGTGCAATGATGCGATCTCGGCTCAACTGCAACCTCTGCCTCTGGGATTCAAGCAATTCTCCTGTCTCAGCCTCCGAGTAGCAGGGACGCAGGCATGCACCACCACGCTGGGCTAATTTTTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTCACCAGGCTGGAGTGCAGTGGCACGATCTCAGCTCACTGCAGCCTCCGCCTCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGCGCACTGCCATGCCCAGCTAATTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGATGGTCTCGATCTCTTGACCTCGTGATCCACCTGCCTCAGCCTCCCAGAGTGCTGGGATTACAGGCGTGAGCCACCATACCTGGCACCCCCCCTTTTTTTTTTTTTGAGATGGAGTCTCACTCCCCGTCATCCAGGCTGGAATGCACTGGCGCAATCTCACCTCGCTGCAACCTCCGCCTCCCAGGTTCAAGCAGTTCTCCTGCCTTAGCCTCTCGAGTAGCTGGGATTACAGGCATGCGCCACCACGCCCAGCTACTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTTGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCACCCTCCTCGGCCTTCCAAAGTGCTGAGATTACAGGCGTGAGCCACTGCATCCGGTCCCACCTTGGCATTCTGAACACAGTCTTGCCTTTCACTGCAGTTTCTGTCAGTCTTCGTGCAGCTTGCACATACCCCAACCCCGTCCTTGATGGACATCATGCTCTGGTTGTTGTTTCTTTAAAAATAAATATGTATTTTTGGCCAGGCGCGGTGGCTCACGCCGTAATCCCAGCACTTTGGGAGGCCAAGGCGAGTGGATCACAAGGTGAGGAGATCAAAACCATCCTGGCTAACACGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCTGGGTGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCATGAACCTGGGAGGTGGAGGTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGGGACAGAGTGAGACTCCGTCTCAAAAAATATATCTATATATCTATATATGTATTTTTTATTTTATTTTATTGAGGTAGTCTTCCTGACTTTTAAGAAACCTATCTCGCTAATTTCAGTCAGTCTTTTAATTTCAGTTCCCTCAACAGAGTAGCACCTAGGAACACATTCATAGTCCCAAATTGAGGGACATTTTGTTCCAGATGAGGGATTCTCTACTAAACTTTCTCTTGTTTCCTAGCTTGGAATATCCAGGGAACAGTTAAATTAGAAGTAATTTATCTCATGCAAATATGAGTTAACAATTTGCTGGGGACCCAGTAAGTTTCTTTTTAGCCTGTGGGATAGGTTCTTAGTGTTGGGTTTAGAACGTAGAATTAATACTGTAGAAGGTTAAGTATAATTGAAATAATATAAAAGTACTTTTGACACTATTTCAGTTATATTATGGCTTAAACAAGCTTTAGTGTTGACTTGGAAACCTAACCACCATGAATAAGATCGTTTTTATGGGGAAACAAATTGGATATTGCCTGAAAGGTTCCCATTTGATCTTCCTAGAGAGAATAATTCACTGCAAATGTTTCATTTCTGCTACCTCCATTAGTTCCCTCCTAGCTAGAAAAACTGATGCTTGCTTAATGTTACCAGTTAGAGCAGCCCTGGCTGGTGCAGTGGCTCATGCCTGTACACAATCCCAGCACTTTGGGAGGCCAAGGTGGGAGGATCACTTGAGCCCAGGAGTTCAAGAGCAGCCCTGGCAACATACATAGCAAGACCCTGTCTCTACAAAAGTAGAAAAACTGGGCGGTGTGGTGGTACACACCTGTAGCGTCAGCTACTTGGGAGGCTGAGGTGGGAGGGTGGACTTCAGCCCAGGAGGTTGAAGCTGCAATGAGTCATACTCACACCACTGCACTCCAGCCTGGGCAACAGAGTGAGAACCTGTCTCAAAACAAAACAAACCCCAGCAGTCCAGGCTGGTCCATGCCAGTCACTTCTGTCCACAGGCATGGAAGGCCAAATGTTGGCTTTGATGACATTCAGAGACACCTGGTTCCAGGCTTGTTTCTGTATCTTGTAGGCACATTTTATTTGCCCTTTTGAATCATAGAGTTCCTAAATGATATCTTCCAGTATCCCTATGAGACTTTACCTAGACATAGGGGCCATTCAGTATAGAGTGCAGACAGACCAAGCAGGATGCAGAAGTTATGGAATGGCGTTAAACAGGGAGATGGGCTGGGCAGATGAGGCCTTATCCTCAGGTCTAAATTCAATCTGTCTTTGTAG
Seq C2 exon
GGGACAAGATGCCAACTGGCAAGCAGCTAGCTGACATTGGCTATAAGACCTTCTCTACCTCCATGATGCTTCTCACTGTGTATGGGGGGTACCTCTGCAGTGTCCGAGTCTACCACTATTTCCAGTGGCGCAGGGCCCAGCGCCAGGCCGCAGAAGAACAGAAGACCTCAGGAATCATGTAGAACTGGGGGGCTTTTTCTCCTGAGCAGAGAGGCCCAAGGCATGCTGTGGAGAGACTTCACCTGCCACCATTTCCAGGTCAACAGGACTAGAGCGTTGATGGTTTTCAAACCCTGTTGGAAGAAAGTGCCCATGGTTTCTCTGGTTCTGCCAGTTTGACAGTTTATGGAGGCTTTTGAATCGTAATAGCAATGTGAGGGTGAGGTACACCTACAGACATTAAATAATTTGCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178449-C12orf62:NM_032901:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF148801=COX14=WD(100=96.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)