MmuINT0002162 @ mm9
Intron Retention
Gene
ENSMUSG00000023020 | 2310016M24Rik
Description
RIKEN cDNA 2310016M24 gene [Source:MGI Symbol;Acc:MGI:1913629]
Coordinates
chr15:99556049-99558567:+
Coord C1 exon
chr15:99556049-99556279
Coord A exon
chr15:99556280-99558075
Coord C2 exon
chr15:99558076-99558567
Length
1796 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
ACTCCAATCTGTCTTTGTAGGGG
3' ss Score
9
Exon sequences
Seq C1 exon
GCTAGACTGAGCGTGCGTAAGAGAGAGGTAGAAGCCGGAAGTTCAAGGCTGGCTCTCGCTTTAGTGGGCGAGTTTTCGCAGGGGGTGTCGGGTCCGGAGCGGGGCTGAGCACCAGTGGCTGAGGAGCTGCGCGTTGGTGACTGCCTCTTCCTGCCCTGCGGCGGCCGCGCGACTCTGCGAGTGGCAGACTGAGCAGGCATCGCTCTGACGCGGCCGAGTTGCAGCCTCCAG
Seq A exon
GTAGGCCGCGGGCCGGACGGCCAAGCGCACTCGCCCTCCCCCCACGCTCTCCTGCTCGGCGCACCGCGCCCCCTGCTCCCCGTGTCGCCGCTTTTCACGCTGTTCCCCTGCTCCCCGTTCCGAGTCCCTGCTGTCCCCTGTGCCCCGCACCGCGCTCCCCTCCGCTCCCCTGTGTCCCGCACCGCGCGTCCTCGGCCTGTGCCCTTGAGAGCGCGCGGCTCCTAGTCCCTGCGCTGTGCTAGCCCCTGCTGGCTCCCCGGCTGTCATAGTCCGACCGCCTTCCTGGTGTGACTGCGGCCTGGCTGTCCTCCCTTCTGAAACTGCTCGCCTCAACCCCAAAGCTCCTCACGGTCCCTCAAAGCCACTTATTTCTCTGAGGTCCTCACCACCTTCTCTGATCCTACAGAATATGGGGTTCATAGCTTACCTTTCTGGGCTCCGTTAGTCAGAAGTTGTTTTCTGCGGACACCAAGTCTCTCCAAAGAGGGCTAAATGACAGAAGCTGGGGTGGTTTTAGGGCTTTGATCCTTATTTGTTTTGTAAAGGATGCCCATCAGATGAAAACCTTCTGCCAGTCTCAAGAGTTTCTTTTATTTCCAAAGTTAATCCTTGTATCTGGGCTTCTAACTTCAGGGTTTTATTGTTTGTTTTTGAGGTTATCTCGGATTTGCTTCTTTTTGTTTCACACCCCCCCCCCGTTTTTTTGTTTTTTGTTTTTGACAGGGTCTCATGTCCACATCCTGAGTGCTGGGATTTCCAGCATATACCACATGCTCTGTTTAATGCAGTTCTGGGGACTGAACCTCTGGCTTTGTGCCTGCTACACTGAGTTACATCCCACTTTAAATCATACTCAAATCTTCTCTATCAGTGAACAAGGTGAAATTAGCTTTTCACCAGGGCGAAGTGACTCTGGCACTCTACAGGCAGGATCCCCCAGACACACACATCCTCAAGTCTATCTTCAGGTCCTCTCTCGGGAGAATTTCACTACCACAATAAGTAGCCTGATTAAAATATGGTTCTGAGGCTGGAGAGATGGCTCAGCAGTTAAGAGCCTTGCTGTTCTTCCAGAGGACCCAGGTTTGATTCCTAGTATAGTCTGGGTGGGCTGGTCACTTTTTTTTTTTAAAGAGATTTATTTCTGGATTTTATGTATATGAATACACTATAGCTGTCTTCAGACACACCAGAAGAGGGCATTGGATCCCATGACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAAGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCGGCTGGTCACTTTTTAAGCACAAATAAGGAGAGCCTGTGTTAGCTCTGATGGCATCGCATCATATACACCTGTTTCCGGCCTTCTGTACCTCGGGTGTAGATGTTTTGAGTCAGAGCTCTGAAACTGCCATGCTTAACTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAGATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCATCAGATCTCATTACGGGTGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTTCGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCCATGCTTAACTCTTTTAAGAGCAGCCACACAGGAGTCACCAGCATAGGATGCATCCGTGAAGATGAAAATAAGGAATGGCTCTCCGGGAAGGAGGAGAGGCCTATCCTGCAGACCAACTCCAATCTGTCTTTGTAG
Seq C2 exon
GGGAAGACATGCCATCTGCCAAGCAGCTAGCCGATATCGGCTACAAGACCTTCTCTGCCTCGATGATGCTCCTCACTGTGTATGGGGGTTACCTCTGCAGTGTACGAGCCTACCGTTACCTCCAGCTGCGCAGTGCCAGGCGCCAGGCTGCAGAAGAGCAGAAGACCTCAGGAGTCCTGTAGAGCAGCGAGGCGTGAGGCCTGCGGCCTGAAATGGAAAAGATTTTCCTGCATGTCAACCCTGGCAAGAACTAGGCCCCCATGCCTTTCAAACCTGCTGGGCTAAAATGCCTTGGTTTCTGTAGTGCTACTAGCTTGTGCCGTTCTGACAGTTTATGGAGGCCATCAAGTAAATGGGAATGTGAGGGTGAGGTTTATTACAGAGATTAAATATTTTGCTTTGTTTGTGTTTTAGTGGTTCTGTGTACCCAGAGAGTAAATGGATCATAGAGGTGTGGCTTTGAGTTCTCTAAAAGCTTGGTCTCTCTCTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023020-2310016M24Rik:NM_183256:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF148801=COX14=WD(100=96.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGTGACTGCCTCTTCCTG
R:
CCAGGGTTGACATGCAGGAAA
Band lengths:
343-2139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: