MmuINT0002162 @ mm10
Intron Retention
Gene
ENSMUSG00000023020 | Cox14
Description
cytochrome c oxidase assembly protein 14 [Source:MGI Symbol;Acc:MGI:1913629]
Coordinates
chr15:99725618-99728136:+
Coord C1 exon
chr15:99725618-99725848
Coord A exon
chr15:99725849-99727644
Coord C2 exon
chr15:99727645-99728136
Length
1796 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
ACTCCAATCTGTCTTTGTAGGGG
3' ss Score
9
Exon sequences
Seq C1 exon
GCTAGACTGAGCGTGCGTAAGAGAGAGGTAGAAGCCGGAAGTTCAAGGCTGGCTCTCGCTTTAGTGGGCGAGTTTTCGCAGGGGGTGTCGGGTCCGGAGCGGGGCTGAGCACCAGTGGCTGAGGAGCTGCGCGTTGGTGACTGCCTCTTCCTGCCCTGCGGCGGCCGCGCGACTCTGCGAGTGGCAGACTGAGCAGGCATCGCTCTGACGCGGCCGAGTTGCAGCCTCCAG
Seq A exon
GTAGGCCGCGGGCCGGACGGCCAAGCGCACTCGCCCTCCCCCCACGCTCTCCTGCTCGGCGCACCGCGCCCCCTGCTCCCCGTGTCGCCGCTTTTCACGCTGTTCCCCTGCTCCCCGTTCCGAGTCCCTGCTGTCCCCTGTGCCCCGCACCGCGCTCCCCTCCGCTCCCCTGTGTCCCGCACCGCGCGTCCTCGGCCTGTGCCCTTGAGAGCGCGCGGCTCCTAGTCCCTGCGCTGTGCTAGCCCCTGCTGGCTCCCCGGCTGTCATAGTCCGACCGCCTTCCTGGTGTGACTGCGGCCTGGCTGTCCTCCCTTCTGAAACTGCTCGCCTCAACCCCAAAGCTCCTCACGGTCCCTCAAAGCCACTTATTTCTCTGAGGTCCTCACCACCTTCTCTGATCCTACAGAATATGGGGTTCATAGCTTACCTTTCTGGGCTCCGTTAGTCAGAAGTTGTTTTCTGCGGACACCAAGTCTCTCCAAAGAGGGCTAAATGACAGAAGCTGGGGTGGTTTTAGGGCTTTGATCCTTATTTGTTTTGTAAAGGATGCCCATCAGATGAAAACCTTCTGCCAGTCTCAAGAGTTTCTTTTATTTCCAAAGTTAATCCTTGTATCTGGGCTTCTAACTTCAGGGTTTTATTGTTTGTTTTTGAGGTTATCTCGGATTTGCTTCTTTTTGTTTCACACCCCCCCCCCGTTTTTTTGTTTTTTGTTTTTGACAGGGTCTCATGTCCACATCCTGAGTGCTGGGATTTCCAGCATATACCACATGCTCTGTTTAATGCAGTTCTGGGGACTGAACCTCTGGCTTTGTGCCTGCTACACTGAGTTACATCCCACTTTAAATCATACTCAAATCTTCTCTATCAGTGAACAAGGTGAAATTAGCTTTTCACCAGGGCGAAGTGACTCTGGCACTCTACAGGCAGGATCCCCCAGACACACACATCCTCAAGTCTATCTTCAGGTCCTCTCTCGGGAGAATTTCACTACCACAATAAGTAGCCTGATTAAAATATGGTTCTGAGGCTGGAGAGATGGCTCAGCAGTTAAGAGCCTTGCTGTTCTTCCAGAGGACCCAGGTTTGATTCCTAGTATAGTCTGGGTGGGCTGGTCACTTTTTTTTTTTAAAGAGATTTATTTCTGGATTTTATGTATATGAATACACTATAGCTGTCTTCAGACACACCAGAAGAGGGCATTGGATCCCATGACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAAGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCGGCTGGTCACTTTTTAAGCACAAATAAGGAGAGCCTGTGTTAGCTCTGATGGCATCGCATCATATACACCTGTTTCCGGCCTTCTGTACCTCGGGTGTAGATGTTTTGAGTCAGAGCTCTGAAACTGCCATGCTTAACTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAGATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCATCAGATCTCATTACGGGTGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTTCGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCCATGCTTAACTCTTTTAAGAGCAGCCACACAGGAGTCACCAGCATAGGATGCATCCGTGAAGATGAAAATAAGGAATGGCTCTCCGGGAAGGAGGAGAGGCCTATCCTGCAGACCAACTCCAATCTGTCTTTGTAG
Seq C2 exon
GGGAAGACATGCCATCTGCCAAGCAGCTAGCCGATATCGGCTACAAGACCTTCTCTGCCTCGATGATGCTCCTCACTGTGTATGGGGGTTACCTCTGCAGTGTACGAGCCTACCGTTACCTCCAGCTGCGCAGTGCCAGGCGCCAGGCTGCAGAAGAGCAGAAGACCTCAGGAGTCCTGTAGAGCAGCGAGGCGTGAGGCCTGCGGCCTGAAATGGAAAAGATTTTCCTGCATGTCAACCCTGGCAAGAACTAGGCCCCCATGCCTTTCAAACCTGCTGGGCTAAAATGCCTTGGTTTCTGTAGTGCTACTAGCTTGTGCCGTTCTGACAGTTTATGGAGGCCATCAAGTAAATGGGAATGTGAGGGTGAGGTTTATTACAGAGATTAAATATTTTGCTTTGTTTGTGTTTTAGTGGTTCTGTGTACCCAGAGAGTAAATGGATCATAGAGGTGTGGCTTTGAGTTCTCTAAAAGCTTGGTCTCTCTCTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023020:ENSMUST00000023761:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF148801=COX14=WD(100=96.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGTGACTGCCTCTTCCTG
R:
CCAGGGTTGACATGCAGGAAA
Band lengths:
343-2139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types