HsaINT0020314 @ hg19
Intron Retention
Gene
ENSG00000165899 | C12orf64
Description
otogelin-like [Source:HGNC Symbol;Acc:26901]
Coordinates
chr12:80765799-80770982:+
Coord C1 exon
chr12:80765799-80765844
Coord A exon
chr12:80765845-80770902
Coord C2 exon
chr12:80770903-80770982
Length
5058 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
TACATTTTATATTTTATCAGGCA
3' ss Score
6.65
Exon sequences
Seq C1 exon
AATGAAGGGATTGTGAAGCTTTATAATGAAGGCTGTTGCAAGATCT
Seq A exon
GTAAGTGAGAGCATATTCCATGCATTTACTTGATAGATTAGTTTTAATTGCTCATAGTGATTATGGTTTTTCTCACAAAATTCAATTCCTATGATGCAAAGAGAGAAACAAATTTTATAAAATATTTTTGTATCGTATGTTTTTTGTATCATATGGTTAATAATTTTGTAATTTAGTCTTTAACTTAAAGGTTTTTGTATCATATGGTTAATAATTTTGTAAATTAGTCTTTAACTTCTGGAGTGTAAAGAAAGTGTTTGCATTTAGATTAATTTTAATTTAAATATTTTTTTATTGTGGCATATTACAAAAGGTATTTCATAAGATTTCAGTATATTTAAAATTTAAAAATGTTTTGTGATCATATTTGTTTGAACCATGCTGAACTTAAACAAGTAGATTACAGTTAGAATGGCATTGTGACTCCAAAAACAACATATGGGTGCAGTATTTTTCAAACCTGTTTGAGTAAGTATATAGTTTTGTACAATAAATTTGGATAATATTTTAGTAAATAATATTTATATCCTTTTCATAAAAGTTCTCATAATTATTTTCATAATTAAAGCTATCTGAATGCAATATATTTTTTATTAGCTTGGATTATAAGGTTTATTTCATAGTAATTGTTTTTTTTTTAGTGAGACGGAGTTTTGCTCTATTGCCCAGGCCGGGGCGTAGTGGCATGATCTTAGCTCACTGCAACCTCTTCCTGCCGGGTCCAAGCAATTCTCATGCCTCAGCCTCCTGAGTAGCTGGGATTACACGCATGCGCCATCACGTCCGGCTAATTTTTATATTTTTAGTAGAGATGGGGTTTCAGTGTTGGCCAGGTTGGCCTCAAACTCCTGGCCTCAAGTGATCTGCCCACTTCGGCCTCCCAAAGTGCTGGGATTACTATTTCATACTAATTTTGAATAATTTTAAGGACTGAAATAGAATAGAGTGTTTTCCATGAAACCACATTTATTTTTTCTTTTTAAAGTGTTTGTGAATTTATCTCAATATAAAAATAGAAATTTTGAGAAAATTAGCATAGACAGTAATTTTAAAATTTAAAGAAGCTTTTAGGAAAGGGGCACAACAAAGTTCAGTTTAATAATACCATGCTGTAATCACAGCACTTTGGGAGGCCAAGTTGGGTGGATCACAAGGTCAGAAGATCGAGACCATCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGACATAGCAGCATGTGCCTGTGATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCACTTGAACCCGAGAGGCGGAGGTTACAGTGAGCCAAGATCACGCCACTGCACTCCAGCCTGGTGACAGAGCTAGACTCTGTCTCCAAAACAAACAAACAAACAAACAAACAAACAAACAAACAAACTGTGGTATAGGGCCAGATTCTTAGATATGAACTGACATACATCTTGAGGAAGATTTCTGAATTTCTTTCATGAAAGACTAAATCCCATAAATATGTAAGAGTAGTCTTATATTTTTAGATATGTAGAGTCATACTGAACAGAATATTAGAATGTATTAAAATATTAATACAAATACTATGTAATATATACTATCTATATACAATATATAATATGTAATATATTATAATTTATTACCACCAAAATCCAATGAAATAGGTTCTGACATTAGCTTGATTTTCCACTTAGTGGCGTTAAATAATTTGTCCAAGTCATACCTCTTGTAAGTGATAATGCTAGGAATCTACTGCGGGTCTCATTTCCCGTCCTGCTTCTTAACTCTTCATGGTATTCTGGAACATTGCCAGGACAAGTTTTAGGAGAGGGCAGAGGCTGAATGATAAGCTCTGCTGAAGTGGCAGGGCTAGAATGACTGAATTTTTATTTACATAATGTCTAAAAAGCCAAACTCAATGCACACATACACACCGACAACAAGCAAAAAAGTCCAACAGGATGGCCTGACATCTAATTTGTTATGATATTAGTTTGCAGGGCTGCTGTAACAAACCAAAAAGTGGTTGGAAATAGAAATTTATGGAGATTAGGACTCCAAAACCAAGATGTCAGCAGGGCTCATTCCTTGGAGGTATTATGAGAGAGAGATCTGCTCCAAACCTCTTTCCTTGGCATGTAGATGGCCATCTTCATGCTCACATGTTGTTTTTCCTGTATGTGTGTCTAACTCCAGATTTCCACTTTTTACATGAACACCAGTAATATTGAATTAGCACCTCCTAATGATCTCATTTTTGCTCAGTTATCCCTGCAAAGATCTTGTGTCCAAATAAGATCACATTCTAAGATACACAGGCATTTTAAGACACAATTCAACCCATGATAATTATATTGCAAAGACTTTTAGGGATAGTATAATATAACCTATATATTTTTAATTACTAAGGCTTTAATTAGATACACACTGATTAAAAACATTCTGTTCATTAGAAATAAGCACGTTTTCATTCAGAATTCTCTAAATCAAATATAAACTAATATGAATCAAATAGTCATTGTATCAGGGGCTCAAGGAATGAAATTTAGCTTTAGAATATGAGGAAATTTAAGATTTCACTTTTTTTTTTCCATCTTCTTCTTCAGATTCTAGACTCTTCCTTAGGTATGAGATGCAGGAATAGAGTCACATGGCAATGTTAAGGCCCTGGCTTCTATATCCCCATGTTAATTATTAGGGAAGTGAGTACAATTATGTTATCTCAGGGCAGACAGGGGAATATCTCTGTGACTAATCATATGAATGACCACTATGGCCTGCCACACACTGACACTCTATTAAGCACATTGCTGACAGGACCACACCTAATCCTCACAACAGTTCTGGAAGGCAGGTATGTTTTCCCTACAGATGAGAAATAGAAGGTTCAGAGAGAAGCTGATCATAGTAGTAAATAATAAATTTAGGCCTGTCCAGTATCTGGGCCCAGGATCTTTCAACTCTGCTAAGTTCTTTGAAGTTGCAGAATAATAACAAGCCACTTCAGTTTCTCTCATCTGACGTGAAAGGACTCGTAATGTAGTTTCTGCTGGCATATTAGAAAACCCTTTCCTGCCGCCTTTGCTTTCTGAAGACTAGGCTGTGTTGAAGAGATTGTGGAGGTTGGATACTATTGCAGGCTCTGTGTTGAATAAAATCTGTTACAATAAAGTTTTTGAGGAATGAATTAGAAATGACTCTTGGTACAAACAAACTCAGCTAATGATAAATTATTGCTGCCCTGGTTTCATTTACTGAATGAATTAACTCGTTGGGTTTTTACTGGGTGCCTACATGACAAACATCTTTTTAGCCACTGGGACCATAATAGTGAATGAAGCAATGTCTGCATGGAGTGTGCTCATTATCAAGAAGGGGAAGAAACACTGAACCCATAAATATATTCTAATATGTCATTTAGTGATGAGTGGTATAAAGAAAAATAATGTAGAATAAAAGGAATGGAGAATGAGAGGAGCTGGGTTGCTAACTTAAGCGGGGGCTTAGAAAATGCCTTGGTGATGAGGCGTCATTTGAGTAGAGACTGAGTGTCCTTGGGAAGCCACCCACATGGTGAAGAGTGTTCAAAGTGGAGGAAATAGCAAAATGTGGCTATTGCACGGAAAGTGAGAGGAGGAAGGTGATAGAAAGAAGAGGGTGAGGCATCTTATAGGTCATGGTAAAGATGATTTTTTTCATTGACTATTCTTTATTCTTGAACTTACGTAAGAATGGAAGGGCTAAGGAAATAATCACTGAGTGAAAGCACCATAAGGGGCAGAACAGCCTGCACTCAACCAACAGCACTGAGCCTCGAGTCACACCATGAGCAAGAGGTTAGTGAAAAGAGATAGAACCAGCATAGGAGACTGAGGAGGAGCCATGAGTGAGATAGGATGAAAACCAAACCAGGTGAGCTCAGGAAGCCAAGTATGGAGGGTGCATTAAAGAGTGTGTTGTGCACATGTACCCTAAAACTTAAAGTATAATAATAATAAAATTTAAAAAAAAGAGGACAGAGTGATGGACTGGGTCAAATACTGCTGAGAAGTCAGATAGGGTGAGAACTGAGAGATGATCTTGAAATTTAGCAATTTGGAGGTCATGAGTGACCTTGAGGACAGTAACCCTTCAGTCAATCTTAGCTACCCATCTCTCCTTCAAGCAGAGTAGCTTAATCTTTATCTATTTTACATGTTGAGATTGTTTTAAATTAGGATTTCATGGCTAAATGTATTTTAAAATTGGGATATAAGTTCACTCTTTTGTAAGTAAGGAAACTCAGCAGGATAATTCAGTGATTTTCCTAAAGTAACAAAGCAAGTTGGAATAGAGAGAACCTTGGTTTTTGTATCTTGATTCAGGGATTACATCCACTATTATACATCATTAAATATAGATGCTTGCATGTAATAGCACGTGATAATCCATTACACACACAGACACATATTAAGATATCATGAATGCATACAAAGTGTTTTCATTTGAAATTATAAAAGACCATTTCAGAGCCATAAAATCAAGTATGACTCATCCATACACTTCAATATGGTTGATAAGTGATTCTATTAAAATTTTGCATTATTTTATATTAATGTCCATTAAGATAATGTGGTTTTAAATCTCTCAATTTTTATTTTAAAATTGATGTATATATGTAGTTATGCATTAATTACATATGCATATATCTACTTATACACTTTATGGTTTATTCCAAAAATTATTTTAAACACATATATGCCACACACAGGTTGATGTTAGCATTATTACATGTGTGGAATATTTCTGATTTCTGATTGTGATAATTATTCTAAGACAATAAGATATAAAGTGGAAATCAATAAGTGTAAAGCCAGAAAATATAAGAAAATCTATTTAGAAGGTGAAAATAAATATTGCACATAAAAATGTAAGAGAGAAGTTTTAAATATCTTTCAATACTGGAATATATTTTATATAAATACACCAATTTTCAACTGTAAATATATTCATATATTTAATTTAAGAAACAATTTAACGTAGGCCTTTGATGAATAAATACATTTTATATTTTATCAG
Seq C2 exon
GCAAACGAGAAGAAAGAATATGCCAGAAAGTGATCATTAAATCGGTCATAAGGAAACAGGACTGTATGAGCCAAAGCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165899-C12orf64:NM_173591:56
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)