MmuINT0071239 @ mm9
Intron Retention
Gene
ENSMUSG00000091455 | Gm6924
Description
otogelin-like [Source:MGI Symbol;Acc:MGI:3647600]
Coordinates
chr10:107200240-107204867:-
Coord C1 exon
chr10:107204822-107204867
Coord A exon
chr10:107200320-107204821
Coord C2 exon
chr10:107200240-107200319
Length
4502 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
ACGTACATTTTCTTTTCCAGGCA
3' ss Score
10.57
Exon sequences
Seq C1 exon
AATGAAGGGATTGTGAAGCTTTATAATGAAGGCTGTTGCAAGATCT
Seq A exon
GTAAGTGAGACTATAGTCCACACAATGACAGATTGCTTTTTCGTGGCTTATATGGTTGTTGTGTTCGTCTAACTGTTGGTTCCTGAGATGTACTTCATGAAGTGTGCCATTTAAATGCTTTTGTGATGTGTGGTTGATATCCCTGTAACCCAGCTTTTATATTGTGTGACATACATAAACACTTTTATTTAGATAAATTTTCATTTCATTTTTTAGACATTTTGCTATTGTGGCATTTTCTAAAATTCACAGACTAGAAATTTCCTTAAAATTAAAATAATATTATGTGTGTGGGTGTTTCACTTGCGTGTGTGTCTGAGCACCACCTGCATGCGGTACCTTCTTGTAGAGACAAGGAGAGGGCATCAGATTCTCTGGAACTAGACTTACAGAAGATTGTGGGCCATCATGTGGTTTGCTGGGAATCAAACCCCAAGTCCTCTGTAAGAACAACCAGTCATCTTAACCATTGAGCTACATCTCCAGCTTCTAGTCTAGGATTTTAATAAGTTTGAATTTCAAGTTCACTGTGATCTACTTTGCTTGAAATATACTCAATGACACAAACTTAAGTACATTATGATAAAATAACATCAAGACACCAATGTAGACATTTAAGAGAGTTATAGTATTTTCAGACTTGTTGAACAAATTTATAAGTCTGTATTTCTGGGAAATGCCAAGAGTGAATTATATTTAAATCCTATATTTAGAAATTTTCATATTAATTAGTTAAATACCTATAATGTATCTTATATTTGTTTTAATTATGTTTATTTTGTGGTGATTTTTTTAATAATGTAAAGACTGAACTAGAATAGAGAATTATTTATGCAACAAACCATTTCTATTTTTAAAAATATGAGCTTATATGAAAATAAAGGTAAAAGTTTTTAAAAATTACAAATGCAGAAATTTAGAATTTATCTAGAGGTGCTTTGGGGGGAGATTATAATTTTGGTTAATGATGTCATGATAGACAGATTGATCGTTAGATATATGCTGAAGTGTTTCTCAGATAAGATTTCTAAGAATCCTAAAGAACGGAATCCCATGAGTATGTACATATAGAGTATTATTTGGTACAAAAGTCCCCCTCAATAAATCCTGGAATTATTCTGATTTTCAGCTCAAAGAAGTTAGGCAACCTCTCAGTTCCATTTGGTATGAACCCAGCATTAAATCATAAATAAGATTCCCCCCTTCCAAGAGAAAGAAAAAGAAAAAAATATCAATTACAACTTGATATTTATTTTACTGTGTTACTTTCTATGTCTACTGTAACTCATGACCTCACAAATCAGGTGGCTTAGCTAATAAACACCAGGGATGTATTGTGTCACAGATCTGGAGTTTCCAAACTGAGATGTTGATGCACAGCACTCTAATGAGTTCAGTGAGAGAATGATCTCCGTCCTTGACTTACAGATACTGTCTTCATATTTATATCAGGTTTCTGTTTTTGTTTTTGTGTATATGTGTGTGTTTCTCCAAATTTCCCTTTTTATAAGGGCCAGCCATATTGCATTATAACCTACATATTGATCTCATTCTCATCTGATTGCCAAACAAAAATCACATTCTACAGCTCTACTAAACTCAGGAAGAATTGAGGGACACAATTCAGTTGACCAGAACTATACTGACTGAGCCTTGGGAATACAGTAACACACATTTTAGTTACTAGAATCTACTGAAACATCCAATGATATTTTTTCTCTTCATTGACAATAAACTAATTTTTAAAAAGAATTATTTATTTATTATATATAAGTACACTGTAGCTGTCTTCAGACACCCCAGAAGAGGACATCAGATCTCATTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCACATCCAGTCCGTGGAGGAAGGTATAACTTCCTAAAATAATTAGGAAATGAAGCTTCAGAGCAGGAGATCCCATTAGACAAGAATGAATATAGCGACACCATAGTTCACCTCTGCCGAGCTCTTTGCGTTGCAGAATAATGGCAAAGGGCTTTGGTAACCCACTTCCACTGTGTTCGAGAATGGGAAGTAGTTTAGGCATTGGAGTTAGGGGACGTTTGTCACAGGTTGAGATTCTGAATAACCAGGTTGTAGAGATTGTGGCGTTTGGATATTACCACAAGTACTGTGATAAAGAAAACATACTCCAAAGAAATCTGTGAGGAATGTATATAGGACATATCTGAAGGAATAAAATATCCAACTAACCAATAATGAATAATATTGTCCCATATATTTATTGAAATTTTTTTCCTTGACAAGGGCAGTTTAATTTCAGCCCACCACTAGCTATCCATCATTCCTTGAACTAGAGTAGCTTAATTTTAACTGTTGGGATTTTATATTTGCATGTATTTTAACTAAAACTATTATGGATAAAGTCACATGGAAATCGATGATGTAATTCTACCATTCAATCAGTAAGTATACAGAACAGAATGAGTCAGTGATTTCCCTAGGGTGACAAAGCAAGTCAGACGCAGAGCGAGGTAAGACTCCTGGTCTTGGTGTCCTGATTCACACTCAATGCATTATCAAAAACTGGTTAAATATACATCCCTGGGTATATTATAATGTAATACTCAGGTGCACACTGGTGCATACTACTGTGTCATGAATGATTATAAGGTGTTTTTTAAATTTGAAATTAAAAAAGGCATTTCAGAGCCATAGAATAAAGAATGAATCACTCATGCATTACAATGATGCTGACAAGTAATTAAAATTTTATATTTAGCATATTAATGAACACTTATAAAATGTATTTCAGTTTTATTTGAAAATTATGTGTTAATCAATTACTTTTACATATTACATATTTACATGTATTTAAACCTAAAAATTCATTATTCCACATTTGTAACACTTTTGACTAATGATAATAATGATTATTCTAAGCTAATTAGGCAAAAGGTGAAAATAATTCTGAATCTAGAAGGTATAAGCTATATGGAAGGAGAAAATAGATATTACACATACCATATGAAGAGTAGATTTTGAAAAATAATTTTATACTGACTATATGTTTTGAATAAAGACACCATTTTCCAACATAATTCTATTTATATTTAAATTATGGAAGCATTTTGCACAGAATTTCAATAGTTATTTATTATTATCTTAAGTCATGTGTACTTATATGTGTATATGTGTGAGCATGTTCATATGAGTATGGTCCGTGGAAAGGGCCTAGAGGTGTCAGGCTCCCTGGAACTGGAGATAGAGGTTTGTGAGCCATGTGATACAGATGCTGGGACCTCCATTTATCTGGAGTAGCAGCAAGGGCTCTTTTTTTTTTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATAGCCACCCACCCCCACTCCCCTACCCACCCACTCCCCTTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGCCTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCAGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTTCTTGGGTACTTTCTCTAGCTCCTTCATTGGGGGCCATGTGATCCATCCAATAGCCGACTGTGAGCATCCACTTCTATGTTTGCTAGGCCCAGGCATACTCTGACAAGAGACAGCTATATCAGGGTCCTTTCAGCATAATCTTGCTAGTGTATGCAATGGTGTCAGCATTTGGAAGCTGATTATGGGATGGATCCCTGGATATGGCAGTCTCTAGATGGTCCATCTTTTTTATCTCAGCTCCAAACTTTGTCTCTGTACCTCCTTCCAAGGGTGTTCTGTTCCCACTTCTAAGGAGGGGCATAGTGTCCACACTTCAGTCTTCATTTTTCTTGAGTTTCATGTGTTTAGGAAATTGTATCTTATATCTTGGATATCCTAGGTTTTGGGCTAATATCCACTTATCAGTGAGTACATATTGTGTGAGTTCCTTTGTGAATGTGTTACCTCACTCAGGATGATGCCCTCCAGGTCCATCCATTTGGCTAGGAATTTCATAAATTCATTCTTTTTAATAGCTGAGTAGTACTCCATTGTGTAGATGTACCACATTTTCTGTATCCATTCCTCTGTTGAGGGGCATCTGGGTTCCTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCAGTTGGGGCATCTTCTGGATATATGCCCAGGAGAGGTATTGCTGGATCCTCCAGTAGTACTATATCCAGTTTTCTGAGGAATCGCAAGACTAATTTCCAGAGTGGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTGCAGCAAGGGCTCTTAACCACTTAACCATCTCTCCACCTCTTACATGGGCTTTTTAATGACGTACATTTTCTTTTCCAG
Seq C2 exon
GCAAACGAGAAGAGCGAATATGCCAGAAAGTGATCATTAAATCCATCATAAAGAAACAGGACTGTGTAAGCCAAAGCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091455-Gm6924:NM_001177567:56
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: