HsaINT0020319 @ hg19
Intron Retention
Gene
ENSG00000165899 | C12orf64
Description
otogelin-like [Source:HGNC Symbol;Acc:26901]
Coordinates
chr12:80632631-80633219:+
Coord C1 exon
chr12:80632631-80632758
Coord A exon
chr12:80632759-80633112
Coord C2 exon
chr12:80633113-80633219
Length
354 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
3' ss Seq
TGCCATCTTTTTTTGCACAGGCA
3' ss Score
8.6
Exon sequences
Seq C1 exon
AGGACTATACAGAAGACATCGCTATGTTTGCAAATAGTTGGTCGGTGCAAACTCCAGATGACACCAAATGTGTACTCACACCCTCAGATTTTCCAAATCCGTGCTCCAGTGGAATGCCAGCATTTGAG
Seq A exon
GTAAATTTGATGTGAGAAATGTGGGCATGTCAGACAGAATACACATATATCTTATTTGTATAATTAACTAAGCATTTTTTAGTGTAAACACAACATAATTTAAAAATATTATATCCAGGAAATGTAATTGCAATAGGAAATCACCTTAATTTTAGAAATAGTGAATGTAGTGAATTTCATAAATGCAGTACTCATGAAAATAATGTAGTCAGAAAAATGTTAGTTAAAATGTATAAGTTACCATCTTTTTCCTTGTGAGAACTGAAAATCTTGCAAATAGATCTGTAAAAATAATAGAAGACTATACACATACCATGAAACATAGTCTAGTGACTGCCATCTTTTTTTGCACAG
Seq C2 exon
GCAATCTTCTTCAAGTGTCAGATACTGTTGCAGTTTCCTTTTCTGAGCTGCCATGAGTATATCGATCCATACTTATATATTGCCAGCTGTGTTAATGATCTTTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165899-C12orf64:NM_173591:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF087426=C8=PU(45.2=91.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACTATACAGAAGACATCGCT
R:
GCAAAGATCATTAACACAGCTGGC
Band lengths:
233-587
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)