DreINT0109106 @ danRer10
Intron Retention
Gene
ENSDARG00000088750 | otogl
Description
otogelin-like [Source:ZFIN;Acc:ZDB-GENE-050419-93]
Coordinates
chr18:6033866-6036649:+
Coord C1 exon
chr18:6033866-6033990
Coord A exon
chr18:6033991-6036542
Coord C2 exon
chr18:6036543-6036649
Length
2552 bp
Sequences
Splice sites
5' ss Seq
GACGTAAGT
5' ss Score
10.93
3' ss Seq
TTTGTGTGTTCTCCGAACAGGAC
3' ss Score
11.01
Exon sequences
Seq C1 exon
GGATCGTCTCTGATGACATTGCTGAATTTGGGAACAGCTGGGCAGTAGATTTGCCCCAGGAGAGACCCTGTCCTGAGGTTGATGATGATTTCCCTGGACCGTGCTCATCAGAGTCTGATATGGAC
Seq A exon
GTAAGTTTCTATGCACATGATAGGCTTTAATGGTGATAAATGTGTAAAAGTTTAAAGAAGACGTATTATGAGAATTGGACTTATTCTGTATTTAAGTGCTATAACTGAGTCTGTGGTGGATCTACAACCTCAAAACAGAAAAATTTGGGGCAGTATGTGGAACGCAAATAGAAAAAGAAAGTAGTGATTTCTATATTTACTTTGACTTGTATTTCAGACAATACAACAAACATAATTTAATGTTTTCCTCATGATTTGTATTGTTTTTTAGTTTAATATTTTTTTTCTAAATAAATATTTACTCCAATTTTGGTTCTTGCAACACATCAAAAAAAGTTGGAACAGGAGCAGTTTAGGGCTAGTGTTCGGGTAAATTGGTTATATAATGATGTGATTTGAAACAGGTGATGTCGACAGGTGATTGTAATTATGATTTGGTACAAAAGCAGCATCCAAGAACTGTCCAGCCCTTTAGTTCATACAACCCAGCAACTTTTTGTGATTAGGAAGGAGGATCTTATTATAGATTACGGTCTCTTATAACAACTGTTCGATTGAGCTGCTGCCTTAAAGCTACAGTTCACCTAAAAAGGAATTTTTTTTTTGCCATCGTTTACCTATACTTGCTCCAAACCTGTATGAGTTTTTTTTCTGTTGAACACAAACGAAAATATACTGAAGTATGTTGGGGAAATTGGCATCCATAAGATGTGTCCCAAATTGCATACTTATGCACTATTCTATGCTATTTTATAGTAAAAATAGTCGTATCCACAATGAAAAATAATAAGTGCACTTTAATTATCTGGATGATGCACTCAATCAAATGGTAAAGAAGTGTCTAATGATTTACACTTTTATTATTATTATTATTATTATTATTATTTGCAAAAAAACTGTTGACAAGTTTGTAGCAATATTTGGTTACAATACAGAATATGAATTGCATTGTCAATGAAAAAATAAATCAATAAAATAAAAGATAAATGAATAAAAAACATGGTTTAAACTTGAAGTTAAGACATTTAAGAATCAATTGCAGTATATAAACTGAAGTCATTACAAAATGAAATGGTTCTGTTTGCTTATTTTTAGAAAATAAATATAAATATATTTATAAATATATAAGATTTGTGTATTCTTGTTGAACATTCTAAAAAAAAAAAAAAAGCTTCGATCACATAGCGGAAGGGGCAGAGATATCCGGTTTACATGTTGGATAACTTTATTTTGGACTGTGAAAGCAAAGTTTTCCTATGAGAGTGATTATAGCGCCTCCCGATGGTGAATGCGGTTATACTCGTGCAGGTATTATTTGGCACTTTGGTCATTTATTTCACTAATTTGTCAAACGTCATCAGGGAATCGGTTTGAATTTCCGCTTAGTAAATATAACATTAGTGTTCCATTTGGGACAATACTATATACATATACTATGCTGTTGAGCGTGTAAGTGCATAAGTGTATATTGTGCCATTTAGGACGCAGCTATAGGATTTGTTCCTTGGGAAGTCAGTGGCTGTGTTTTTTTTTCCAACAATCTAAATATATCTTCCTTTGTGTTCAACAGAAGGAGTTCATGAAAGAAACACTTGTGTAAATTTAAATCTGCACATTTATTTTTGGTAAATGGCCATAGTGTACTAGTTGCTAACGTTCAAGCAGAACATGGTAACTGTTCTGTCGCATGCAGACTGCATAGGTGAGCACAGTCATTTCTGTTTACTTCCTGTAGCAGCTGGAGATTTACTATGATGAATGTACCGACAAAACCCTGAAGTTTTAGGTTGAAACAACATTGCAGTGGTATTTTAGGAAATGAAGGAAATGTGCTGAAGAATTTTACAGTATATGTGGCTCAGTGTTTAGCACTGTCGCCTCATAGCAAGAAGATGACTGGTTCGCGTCCTGGCTGGGACAGTTGGCATTTCTGTGTGGAGTTTGCATTTTCTCCCCATTGGCGTAGGTTTCCTCTGAGTGCTGTGGTTTCCCCCACTGTACAACGACATGCGCTATAGGTGAATTGAATGAAGTAAATTGGCCACAGTGTATGAGTGTGTGTAAATGTGAGTGTGTATGGGTGTTTACCAGTACTGGGTTGCAGCTAGAAGTGCATCTGCAGTGTAAAACAAATGCTGGAATAGTTGGTGGTTCATTCCACTGTGACGACCTCTGATAAATAGGGGACTAAGCCGAAGGAGAATGAATGAATGAAGGAATGCGTGAATGAATATTTTTTTACAGTGTAATTCTTCACCAATGAGGGTCAGAATAGCTGTAGACTCCCCCCTCTTGAGGTAAGAAACAGCAGTACATTTGCAATAGGGACACAATTTGACAAGCTAAATTTAATGAATTGTGGGTCATTTTACAGACATATTCTGAGGACATAAGAGATTTATTTTTTCTCTTATGAAAGCGGTGATATGTCTTCTTTAAAACAGAAGTTTTATAAATGTGTCAGGCCTGTTTTTCTGCGACTCTTCAATCTGTAAAATGTGAAAATGGCGTCAGATTTAGCAACTTTGCTTGTTTGTGTGTTCTCCGAACAG
Seq C2 exon
GACGCCATTGAGAAGTGCAGTGCATTGCTTTTCTTCCCTTTCATCTCCTGCCATGAGAACATTGACCCAAATCCATTTGTTGTCAGCTGTGTTTCGGACATGTGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088750:ENSDART00000092804:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(0.7=2.4),PF087426=C8=PU(0.1=0.0)
A:
NA
C2:
PF087426=C8=PU(49.3=97.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]