HsaINT1025851 @ hg38
Intron Retention
Gene
ENSG00000165899 | OTOGL
Description
otogelin like [Source:HGNC Symbol;Acc:HGNC:26901]
Coordinates
chr12:80238851-80239439:+
Coord C1 exon
chr12:80238851-80238978
Coord A exon
chr12:80238979-80239332
Coord C2 exon
chr12:80239333-80239439
Length
354 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
3' ss Seq
TGCCATCTTTTTTTGCACAGGCA
3' ss Score
8.6
Exon sequences
Seq C1 exon
AGGACTATACAGAAGACATCGCTATGTTTGCAAATAGTTGGTCGGTGCAAACTCCAGATGACACCAAATGTGTACTCACACCCTCAGATTTTCCAAATCCGTGCTCCAGTGGAATGCCAGCATTTGAG
Seq A exon
GTAAATTTGATGTGAGAAATGTGGGCATGTCAGACAGAATACACATATATCTTATTTGTATAATTAACTAAGCATTTTTTAGTGTAAACACAACATAATTTAAAAATATTATATCCAGGAAATGTAATTGCAATAGGAAATCACCTTAATTTTAGAAATAGTGAATGTAGTGAATTTCATAAATGCAGTACTCATGAAAATAATGTAGTCAGAAAAATGTTAGTTAAAATGTATAAGTTACCATCTTTTTCCTTGTGAGAACTGAAAATCTTGCAAATAGATCTGTAAAAATAATAGAAGACTATACACATACCATGAAACATAGTCTAGTGACTGCCATCTTTTTTTGCACAG
Seq C2 exon
GCAATCTTCTTCAAGTGTCAGATACTGTTGCAGTTTCCTTTTCTGAGCTGCCATGAGTATATCGATCCATACTTATATATTGCCAGCTGTGTTAATGATCTTTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165899:ENST00000547103:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF087426=C8=PU(45.2=91.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACTATACAGAAGACATCGCT
R:
GCAAAGATCATTAACACAGCTGGC
Band lengths:
233-587
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains