RnoINT0106105 @ rn6
Intron Retention
Gene
ENSRNOG00000030316 | Otogl
Description
otogelin-like [Source:RGD Symbol;Acc:1589018]
Coordinates
chr7:51798142-51798748:+
Coord C1 exon
chr7:51798142-51798269
Coord A exon
chr7:51798270-51798641
Coord C2 exon
chr7:51798642-51798748
Length
372 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
TTTTTTTTTTTTTTGCCCAGGCA
3' ss Score
8.79
Exon sequences
Seq C1 exon
AGGACTACACAGAAGACATTGCTATGTTTGCAAACAGTTGGCTGGTGCTAACTCCAGATGATGCTAGATGTGTACCCACTCCCTCAGACTTTCCAAATCCGTGTTCCAGTGGAATGCCAGCATTTGAG
Seq A exon
GTAAGCTTACTATAAAAAATTTTTTTTGAGCATGTTGGGCTTAATACCAATCTATTTTCGCATCTTTAGCATTAAGCATTTTAGTGCAAATATGGTATAATTAAATTATTGAATTCAGATTCTGTAATTGCAGCATGGAATGACTTCACATTAATTTCGAAAGTAGGGGATATAATGGGATTCATCATTATAATAATTCATGTAGAAAATAGACGAGTTGAGGATTGTTCATTGCATTTTATAAGTGTAAATTATCTTCCCTTTTCTGGTAAGAACAGAGAGTTCTGAGAGTAGATTTATACCAAGTAGAATGGACATACTCACGTGCCCGATTCTGGTGATTGACATCTGTTTTTTTTTTTTTTTGCCCAG
Seq C2 exon
GCAATCTTCTTCAAATGCCAGATATTGTTACAGTTCCCCTTTCTGAGCTGTCACGAATACATTGATCCATACTTATACATTGCCAGCTGTGTTAATGATCTGTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030316:ENSRNOT00000043774:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(0.1=0.0)
A:
NA
C2:
PF087426=C8=PU(47.1=91.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACTACACAGAAGACATTGCT
R:
ACAGATCATTAACACAGCTGGCA
Band lengths:
231-603
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]