MmuINT0071244 @ mm10
Intron Retention
Gene
ENSMUSG00000091455 | Otogl
Description
otogelin-like [Source:MGI Symbol;Acc:MGI:3647600]
Coordinates
chr10:107886467-107887078:-
Coord C1 exon
chr10:107886951-107887078
Coord A exon
chr10:107886574-107886950
Coord C2 exon
chr10:107886467-107886573
Length
377 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
GGCATCTGTCTTTTGCACAGGCA
3' ss Score
6.66
Exon sequences
Seq C1 exon
AGGACTACACAGAAGACATTGCTATGTTTGCAAATAGCTGGCTGGTGCTAACTCCAGATGATACTAAATGTGTACCTACGCCCTCAGACTTTCCAAATCCATGTTCCAGTGGAATGCCAGCATTTGAG
Seq A exon
GTAAGTTCAGGAAAAAAAAAACCCAAAAACCAAAAAACAAGTAACGGAGCATGTTGGGCTTAATACTAATCTGCTTTTGCATATTTAGCATTAAGCAAATACAGAACAATTAAATTATTGAATTCACATTATGTAATTGCAATATGGAATGACTTCATATTAATTTCAGAAGTAGGGGATATAATTGGATTCATCATTGCAGTAATTCATCTACAAAGCACATAGCTGGGGAGCTGTTCATTGCATTTTATAAGTGTAAATTATCTGCCCTTTCCTGATGAGAACAGAGAGTTCAGCAAATAGATGAATACCAAGTGGAACGAACACACTCCTGTGCCAGTGACGTTTCTGATGATTGGCATCTGTCTTTTGCACAG
Seq C2 exon
GCAATCTTCTTCAAATGCCAGATATTGTTACAGTTCCCCTTTCTGAGCTGCCACGAATACATTGATCCATACTTATACATTGCCAGCTGTGTTAATGACCTGTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091455:ENSMUST00000165341:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF087426=C8=PU(47.1=91.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACTACACAGAAGACATTGCT
R:
CAGGTCATTAACACAGCTGGCA
Band lengths:
230-607
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types