HsaINT0023599 @ hg38
Intron Retention
Gene
ENSG00000154479 | CCDC173
Description
coiled-coil domain containing 173 [Source:HGNC Symbol;Acc:HGNC:25064]
Coordinates
chr2:169650329-169654214:-
Coord C1 exon
chr2:169654075-169654214
Coord A exon
chr2:169650522-169654074
Coord C2 exon
chr2:169650329-169650521
Length
3553 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
GTATGGTTATTTTGTTATAGGCT
3' ss Score
6.77
Exon sequences
Seq C1 exon
GAACATATGCAGGATAAACATATTATCAAAGCTGTAGAACAGCAGCAGCAAGAGGAAGAAGATGAAAAGATGAGAAAATTCATCAAAGCAAAAAAGCGTCTTATACAAATGGGGAAAGAAAAAGAGGCTGAAACACACAG
Seq A exon
GTAGGCTTTAATAATGTGTATAATAAAGTACTATCTGAAATTATTATGATTTTATGATTATTATGACAGTAGTCTTTAGGAACAGAGATCTTATTTTATATATGACTAGAGCATTCAGTGACTTGATTTCAGTTTGGGACGTGGGTGTGAGGACATCATCTTGTAGATGGTCAGAAATGCTGATCTGCCATCCCAGAGGAAGTATGAGCTGAAGATGGCTTTGTGAGTCATTGGTATATAAGTGGTAGTTGGAGTTGTCGATACAGATGAGCTCACCTAGGGTGAGTAGGTAAGAAATGAAGGTGGCATAGTCCCTAGGGAACTCCATTTAAAAGTCAAATGGAAAAAGAAGATAACACGAAGACCAATAAATAGTTTCCAGAGATTGGAGGAAAACCAGGGAAACATCAGAGAGAAGACTCTCAGTAAGAAGGGAGCAGTCATCAGTATTAGGTCGTAATGGGATTAAGTACAATTTTTAAAATGAAGTATTCATCAGATTTAGAGGACATTGCTTATATTAGTGAGCAGTTTGGTATGGGGTGTAGAGGTAAGAGTAGGAGGCCAGATTGCAGTACAGGGGGTTTCTGTCTAAATCATGCTTTCCCCTTGTGCAAAATCCTCTGATGGCTTCACATCTCACTTAGTCTTTACAATGGCCCATAAGGCTCTCCACCTACCCAAATTTCCATCTTCCCAGCTCATCCCTCCCAGCCTTATCCCTCAGACCTCTTCTCTTACTATTCCCTCCTCTCCCTCTTCTCACCTGCACTGGACTGGCCTCTGCCTGCTCTAAGGAATGCTCACCTCCAGAGAGCACGTAACTTGCTTTCTTAACTCTTTCAGATCTGTACTTAAATATTACCTTCTCATTGAGGCTTTCTCTGACTACTTTATTTAAAATTATACCCCCTCCCCAATTGCTTATCACTTTACCTGCTTTCCTCGCCCTCGTTGCTTGATATATAGCACTATATATATATACATACATATATATACACACATACATATATATATATATATATATATATATATATATATATATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTTACTGCAAGCTCCACCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGTTGGGACTACAGGAGCCCGCCACCAGGCCCGGCTAGTTTTTTTTTTGTAATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCCGGCTATTTTTTAAAACTATTTATTTTGTTTACTGTCCCTCTCCTCCAGCAATCATGAAAGCCCCATGAGGGCAGAGATTTTTATTTTTATTAAAACTTTTTTTTAGAGATGAGGTCTTGCTATGTTGCCCAGGGTGGAGGACAATGACCATTCACAGGCGTGATCACAGTGCCCTGTAGCCTCAACCTCATAGCCTCAAGGGATCCTTCTATCTTAGCCTCTTGAGTAGTTGGGACTAAAGGTGCGCACCACCATGCCCAACTTCTAATGTTTTTGTTCACTGTTATGTCTGTCCCCAGCACCGGGAATAGTGTCAGGAGCATAGTAAGCAATCAATAAAACTGTTTAAAATACTATTTTTTGGAATTCTACCAGAAATGTCACCTTTTCTCTGAAGGCTTTCTTTTTTTCTCATTTGTCCATATCATTTTCTAGCTTTCTCATGGCATTTATTATCTTTTGTCTTCTATAACTATAAAGACATTTGCATAAATGTCTTTTCTCCACTTTAAATTGTAATTTCCTTGGAGTATGCACTGTATCCTTTCTCATCATTTCTCACATGCTGCTTTGCCAATTCACTAAGTGAATTTGTCACAACAAAATTATTTTTTATGCAATTTCATAAATAAAAATGCCCTAATTTAACAAGATGTATTCTTATGATGTACCAGGCACATGCTTAGGCTCTTAACTAGAGAGAGGACCCATTCAATTTCTGACCTGAGGAATCTCATAGTGAATTTGAGAGGCCAAAGTAGGAGGATTGCTTGAGGCCAGGAGTTTGAGACCAGCCTGGCCAGCATAGCAAAATCCTGTCTCTTAAAAAAAAAAAAAAAAAAGGAACCTTATAGTGTAAAGGGAGAAATTTAAACAGATCAAGTTAAAAAAGTGCTGTGAATAAATTCCAGACAGAGTATTGTGAGGGGATGGATATTTAGGATTTTGATAACTTTTATTAGATTATTTCCTTGATTTTATTTAAATAAAGGCCTTTTATAGCCTCAGCCTCCAATGATAGAGTAAGCAGGGTAGTCTGATAAAATATTGAAATATTTTCTGTGGCCAGGTGCAGTGGCTCACACCTGTAATCCCAGCATTTTGGGAGGCTGAGGCGGGCGGATCACTTGAGGTCAAGAGTTCAAGACCAGCCTGGGTACATGGTGAAACTCCCTCTCTACTAAAAATAAAAAAACTAGCTGGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGTGGAGGTTGCAGTGAGCCAAGATTGTGCCACTGCACTCCAGCCTGGGTGACAGTGAGACTCAGTCTCAAAAAAAATTTTTTTTCTTTTTTTTTAATAGAGTCTCACTCTGTCACTCAGGCTGGAGTACAGTGGTACATAGCTCACTGCCACCTTGAACCCCTGGGCTCAAGCAGTCCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTCCGTGCCACTGCGCTTGGCTAAATTTTTTTTTTTTTTTTTTCAGACAGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGTGTGATCTCGGCTGACTGCAACCTACGCCTCCTAGGTTCAAGCGATTCTCATGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCCTGCCACCACGCCCGGCTAATTTTTGTATTTTTAGTGGAGACAGGGTTTCACCATGTTGGTCAGGCTAGTCTCGAACTCCTGACCTCGTGATGTGCTCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTATGAGCCACCACGCCCAGCTTAAAAAATTTGTGGAGATGGGGTCTTGCCATCTTGCCCAGGCTGGTCTCTTAACTCCTGGGCTCAAGCGATCCTACCACCTCAGCCTCCCAAAGTGTTGGGATTACAGGCATGAGCTACCACACCTGGCCTAAAATATTTTTCAGTGTAGATAATTTTAAGATCTTATTTCTTAAACACACACACACACACACACACACACACACACACACAGATTATACATATTACTGTCTTTGGATTTTAGAATATATGTTACTTTATAGTTAAAAAATAATGTCCACTTAAAATAATATATGTAAGGAGCAATGGGGCTCCTGTTAGTTTTGTAAGAGACTGCAAAATATCTCAGATTCCCTAATTAAATTATGTTGGCTCCATTGGACATGTGTTCATGAAGATTTGACGAGTATGGTTATTTTGTTATAG
Seq C2 exon
GCTTATGGAGAAACGAAGAGAAAGAATACATAACTTCCTGAGTGAACTGTTGAAAGAGAAACTTGACAATGAAGATATGATTATTGCTAGAGATATTGCAGAAGCTGAGGCTGAATGGGAAAAAAGAGAAAGAGAAAAAGATGAAAAAAACAAAGCAGAATTAAAAACAATTGCAGAATATCGAGCCATTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154479:ENST00000447353:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.787 A=NA C2=0.323
Domain overlap (PFAM):
C1:
PF138681=Trichoplein=FE(13.7=100)
A:
NA
C2:
PF138681=Trichoplein=FE(19.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development