MmuINT0004445 @ mm9
Intron Retention
Gene
ENSMUSG00000070883 | 4930578N16Rik
Description
RIKEN cDNA 4930578N16 gene [Source:MGI Symbol;Acc:MGI:1923100]
Coordinates
chr2:69609989-69614326:-
Coord C1 exon
chr2:69614187-69614326
Coord A exon
chr2:69610182-69614186
Coord C2 exon
chr2:69609989-69610181
Length
4005 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGGA
5' ss Score
7
3' ss Seq
ATGTGGTTGTTCTGTTACAGGCT
3' ss Score
8.89
Exon sequences
Seq C1 exon
GACAATATGCACAATAAAAACATCATCCGAGCTGTAGAACAACAGCAGCAAGAGGAGGAAGACGAAAAGATTAGAAAGTTTATCAAAGCCAAAAAACGTCTTATACAAATGAGGATGGACAAAGATGCTGAAACACATAG
Seq A exon
GTAGGATTTAAAAATCCTTTCAGCCTTATTTATCTTATGAGTGTGAATGTTTTGCTTGTGTGCATGTAAGTGTACCACAGCAGTGTCTTCCTCCTTCTGTATTCCTTGGAATTGAAGTTGTGGGTTGTTGTAAGCCATCATGAGGGCGCTGAAATCTAACCTGGGTCCTCTGTAAGAGCAATGAGTGTTCTTAACGGCTGAGCCATCTGTCTAGCCCCACAGGTAGGACTTTAACATAATATAATACCAAAGTGCTATCTGAGATCACTTTCCAGTGACTCAGAAATTGCACTATGATGATTGTCTTTGGGAATTGAAGTGTCATAGATGACATTTAGTGACCTGATAGTTTCTGTTTGGGACATGGGAGTTGAAGTGTACCATGGAACATTCCAGAACTCTCTGCTAGATGGTTGAAAACACTGGTATGCTGTAGGAGAGGGTGATCTGGAGGAGGCTCTATGAGTCACTGGTCTATACATTTCCTTTTCTCATTGCTGTAGCTGAGTACCTGACAAGAAACAACGTAATGAAGGCAGAGTTTAGCTAGGCTCACAGTTTCAGGTATATACATAGCTTTATGTGGTGGAAAGGCATGGTGGCCAGAGCATCTCATGGCTGTGGAGGCAGAAGCATGAGACTGTTTAGATCAACGTGGACCAGAAAGCAGAGTGAGATCAGTGCTGGTGCACGGGCTCAGTTCCTTTTCTCTTTTCCTCTCCTTATTCAGTCCAAGACCCCAGCCCATATTTAGGATGGGCCTTTCCCTCTCAGATAACCTCTCTGGAAATGCCACAACAGATGTGCCCCAATATGTGCTTCACCATTGTCTTAGGTGTGTATTTTTATTTTTATTTTTTGAAACAAGGTCTTTCTATATAACCCTGGCTATTCCTGAACTCACTATGTAGACCAGGTTGTCCTCAAACACACAGAGATCCACTTGCCTCTGCCTACCAAGTACTGGGATTAAAGGTGCCACTATGGCCCGTACTCCTAGATCTTTAGTAAGGATCCCCTTCCCATGGAAGATTTTCAAGAGTATCTCAATTAAAAGTTGCATCTGCTAGAGTAAAACCCAAAAATGAAAAGTAAAAAACAAAGAAAAATCTCACTTTAGTAGTCAGCTTTCCAGTATTGCAGGAAACACCTGACTCTTCAGGCTAAAATGAGAGAAGTTTTATTTTGGTTCACAGATTTGGAGACTTTTGGTTCATAGTCAGTTGGCATTTTTGCTTTTGGAGCTATAGCAAAGCGATACAGCGGGGTAGGCGTGCATGCTGGAGAGACCTGCTCCTCATTCATCTCTCAGGAAGCCATGGTTCTTGAGAGGGTGAGCAGGTGGAGCCTAATTGACAGAAGTGTGGTAGTGGGATACACCCTCTTGGGGCTACGTCCTTTGCCAGCCGTTCTTTTTCTTTCTTTTTTTTTAAATTTTAAAATTAGATTTATTAATTGTATGCATAAGTGTTTTGCTTCCATGTCAGTCTGTGCACCACGTATGCACTTGGTGCCAGCAGAGGTCAGAAGACGGCATTGGTTACCCTGGATCTGGAGTTAGGGGTGGTTATAAGCTGGTCATGTGTGCTAGGAATCCAGCCTGGATCCTCAGAAGAGCAACAAGTGCTCTCAACTGGTGAGCCATTTCTCTCCACACACCTCTGCTCTTTCTTTATCCTTCCACCTGGCTGCCATTTTTAGTCCTGTTCTGCCGTTCTCTTCCCTCCATGATCAACTGACGCCTCTGAAAACATGAGCAGAGATAAACAATACCTCCTTTTAAGTTCTTAAACTAGGCATTCTGTTAAAGCACTGAGGAGACTCACACAAGGGTGGAAGTCTTTAACACGTTTTTACTGTTAGGCTCTCAGTACCTAGAATAATATATGCAAATAGTTAAGTGTTCCATCTGTAAGTGCGTTTAGAACAGTGTTTGAAATATTAAGTGAAGCATCACCTTTTCTACAAGTCTTCTGCATGGCTGTCTAGCGTTCTCACGGCCTGTACCACCATCTGCCATCTATACATATCTATACATATGCAGGCATACATGTACACATATATGCATATACATATGTATATGCACATAAATACCGCCTCTTTCCCACTTCAGGATCTGCTTTCTTTTCACCCAGGATGCTGTTCTTTCCATGATTTCTCACATAAGACAAACTCACTAATAAATTAGTGACCCTGCCATAACTAATTAGAATACTTCTGTTTAGTCTCCTTCTCTTGTTACTTTAATAAAATGTGCTTATTATGTACGACGTTCCAGACACATACTTGGCCCTGGACTAGAGAGAGGATTCATGCAGTCCTGGCCTCAGAAACTTCATAGTGTTAGGACATATAAACTGATGAAATCAACACATTTGTGACTTGGTTCCAGGTGGCATTTAGTGAGAGGATGAATTATTTAGTATTTTGGTAACTTAGTTATCTCCAAGTTTTATTTAAAGAAAGGATTTTTATAGTGTAAGTCTCAGTGTTAGAGCAAGTAGAATAGTCCAGCAATGTATTCCAAAATGTATCCTGAGCTGCACAGGCACACATGCTGCACATGGGGGAAGGCGGGCGGTGGCAGTGAGTGGCTCCTGAAGGAGCTCCAGCAGCCACTGTGAGAGTCAAAAGAAGAAAAAAGCAAAGCTAGCAGATGGGGCATGTTTTTAATCCCAGCACTTGGAAAACAGAGATTCAAGAATCTCTGTAAATTTGAAGACAGCCTGCTTTACGCAGCAGTTCCAGGCTAGCCAAGGTTACATAGTGAAACTCTGTCTCAAAAAATAAAAATGCTGAGACCTATAGAGGAAGAATTGCAACATCAGCTTCTGGTCTTCACTTGCACTCACCCATACACTCATGAGCACATGCAGGCATACATGAAAGTATCTTCCAGTGTTGTGAAGAGTTTTAACACTGAAAGACCCTGAGAGGAGCCCCTCGCTCAGGCCTTGGGATAATAGTGGACCCCCAAGAACTCACAAGAGTCCAAGCTTGATGCAAACCACATGAGGCTCTATTTGGGGAAAGCCAGAGCTCTGGGGATGACTCATATCTCACGCAGGGGTAGAGGAGTCGACCTCGAGGGGAAAGAGGTCCCAGTTTTTATAGGCCCTCAGGGGGGAAAGGAGAGGGAGGAGTAGGGGATTTCCAGATCTAAACAATGTCTATTCTCAAGAAATGGGTATGGGAGGGGTACAAGGAAAGAGTCTGGTGCAGGTGTAGCAACTCAGGATTGGCCGGGCTATGGTTGCTGGGGAGATTTTCTGACTCTATCTTAGCAACCAATATCACAAACACCTGGCAGTGAGGTGCAGCAGTGGGCACACACCTGGGTTCAAGGAATGGTCAGAACATTGGCAGACACACGGGTTCGAGGAGCGGCCAGAGCATTGTGCACCTCTATTTTTCTAAATCAGTGAAGCTACTTCTGCTAACAATGAAATCTATTTTGCCAATTTCAGGGCTTCTGTGACCTTTTACATTCTGTCAATATCTTTCAACACCTTTTCTTTCTTTTTTTTTTTTAAAGATTTATTTATTTTTATTATATATAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAGTCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTTCGGACCTTCGGAAGAACAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCTCAACACCTTTTCTTAAACAAGTATACATGTGATTATATTGTACATATTGCTCACTTGGAAATTTTTAGTATACATGCTACTTTGTAGTTATGAAATTAATTTCCTTATTTATCTCAAGAATTAAATTTTTAAAGTGTATAGCAAATTAATTTCTACTTGATATAACTATATATAAAGGGAACCACAATTTTTTTAGATGATTTTAAATTATTTCAGATTCCTTAATGAAAGTATTGTAACTCCATTACAGAGCTGTTCAGGGTGACTTGGCAAATGTGGTTGTTCTGTTACAG
Seq C2 exon
GCTAATGGAAGAACGGAGAGAAAGAATAAATAATTTCCTAAGTAAACTAATAAAAGAGAAACTTGATACTGAAGATTTGATTATTGCTAGAGATATTTCTGAAGCTGATGCTGAACTGGAGAAAAGAGAAAAAGAAAAACATGAAAAAAATCAAGCAGACTTGAAAGCAATTGCAGAATATAGAGCCTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070883-4930578N16Rik:NM_001077684:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.638 A=NA C2=0.338
Domain overlap (PFAM):
C1:
PF138681=Trichoplein=FE(13.7=100)
A:
NA
C2:
PF138681=Trichoplein=FE(19.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: