HsaINT0024214 @ hg19
Intron Retention
Gene
ENSG00000106804 | C5
Description
complement component 5 [Source:HGNC Symbol;Acc:1331]
Coordinates
chr9:123770686-123776348:-
Coord C1 exon
chr9:123776151-123776348
Coord A exon
chr9:123770777-123776150
Coord C2 exon
chr9:123770686-123770776
Length
5374 bp
Sequences
Splice sites
5' ss Seq
TACGTAAGT
5' ss Score
9.27
3' ss Seq
AATATGATTTTTTTGTCCAGACA
3' ss Score
5.04
Exon sequences
Seq C1 exon
CTGCTAAATATAAACATTCAGTAGTGAAGAAATGTTGTTACGATGGAGCCTGCGTTAATAATGATGAAACCTGTGAGCAGCGAGCTGCACGGATTAGTTTAGGGCCAAGATGCATCAAAGCTTTCACTGAATGTTGTGTCGTCGCAAGCCAGCTCCGTGCTAATATCTCTCATAAAGACATGCAATTGGGAAGGCTAC
Seq A exon
GTAAGTATGACATTTTCTATCAGAATTCTGCTCAATATGGGGAATTTTGTGTAATTTTATGCTGCTAAGAAAGGCAGTTTTCATGATCTATTTAGAATTGAAAGTAGAAAAGATAACTTGTAAATGTCCATAAGAAAAAAAAATCCTTCATTTTTGGGCATCCGAAGAGGTACAGTACAGAGCAGAGTACACTAGGCCAGAGTTAAGACCTGGCATAACCTTAAAGCCAAGTCATCCCATAAACTTGAATGATTATTTATCCTCTCTGAGCCTCATGCAAGGAGCTTCGACCAGATCCTCTCCAATATGCCTGTGAGTTCTACAAGTCTACGCTTTTGTGATATTACAACCATTAAAAATTCTGTCTATATCTACATTGATGAAATAAAGCAGAATATTTCTAAATCTAGCCTAAGGTTAAGTGTACTTATATAAAAGCTGATGTCTTATTTCAGTTTCAACCACAATACATGTTTCCAGAATTTATAGAACTCTCATTAACATGTTTTCAGAACTTTTAGGACTTTATATATAGTCTTTTTTTTTTTTTTTTTCAGTAGGAATCTGGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCAATCTTGGCTTACTGCAACCTCTGCCTCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAACTGGGATTAAAGGCGCCTGCCACCACACCTGGTTAATTTTTGTATTTTTAGTAGGGACAGGGTTTCACCATATTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCGTCCACCTCGGCCTCCCAAAGTGCTGAGATTACAGGCGTGAGCCACTGTGCCCAGCCTATGTATAGTCTTTAACAAAACAAGCAAAAGCAAAATGACAGCTTCTGTTTTATACTTATGTGTGCTGCGTAATGACATTTTCATCAATGATGGACCACATGTGCAACGGTGATCCTATAGGATTATAATACCGTATTTTTTCTGTACCTTTCCTGTGTTTAGATATGCTTAGATACACAAATACTTATCATTGCATTACAGTTGTCTGCAGTATTCTGTTCAGTAACATGCTGTACAGGTTTGTAGCCTAGGAGAAATAGGCTATACTATATAGTCTAGATCTGTAGTAAGTTATACCATCTAGATTAGTGTAAGTACGCTCCATGATGGTTACACAACAAAATCATCTAACAACATATTTCTCAGAACATAGCCCTATTGTTAAGCAATATCTAATAACCATAATTTTGGTAAATGGCCACAAAATTTATGTTTGTAGAAATATATTCATTGAGATGTACAGTGTCTAAGATTCAGATTGTTTTCCAATATTTGTTTTGCTTTGTTTGTTTGTTTGTTTGAGAGACAGAGTTTTGTTTTTGTTGCCCAGGCTGGAGTGCAATGGCGCAGTCTCAGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACATGCACCTGCCACCATGCCTGGCTAATAATATTTGCTTATTATAAGCAGAATTTTAATAAACAGTCTAGTCCATATGTTGTTTTTCTTTTTGGAGGGAGGATTTGGCTTTTTTTTCTCTTAATTTTTTTTAATTTTTAAATTTATGTGGGTAAATAGTATTTACGGGGTACACGAGATACTTTGATACAGGAATGCAATAAGTAACAATCATATCATGGAAAATGGGGTATCTATCCCCTGAGGTATTTCTCCTTTGTTTTATAAACAATCCAATTATACTCTTTTAGTTATTTTTAAATGTACAATTAAATTATTATTGACTGTAGTCACCCTGTTGTGCTGTCAAGTACTAAGTCTTATTCATTCTTTCTATTTTTTGTACCCATAAACCATCCCCACATCCCCCTCATCCTCCTACTACCCTTCCCAGCCTTCTACTCTATATCTCCATAAGTTAAATTGTTTTGATTTTTAGCACCCACAAATAAGTGAGAACATGTGAATTTTGTCTTTCTGTGCCTGACTTATTTCACTTAACATAATGACCTCCAGTTCCATCCATATTGTTGCAAATGACAGGATCTCATTCTTTTCATGGCTGAGTAGTACTCCATTGTGTATATGCACCACATTTTCTTTATCCATTTATCTGTTGATGGACATTTAGGTTGCTTCCAAATCCTGACTATTTTTAACAGTGCAGCAACAAACATGGGCGTGCAGATATCTCTTCGATGTACTGATTTTCTTTCTTTTGGGTATATACCCAGCAGTGGGATTGCCAGATCATATGGTAGCTCTATTCTTTGTTTTTTAAGGAACCTCCAAACTGTTCTCCATAGTGTATAGTAATTTACATTCCCCACTAACAGTGTACAAGAGTTCCCTTTTCTCCACATCCCCTCCAGCATTTGTTATTGCCTGTCTTTTGAATAAAAGCCATTTTAACTGAGATGAGATGATATTTCATTGTAGCTTTGATTGCATTTCTCTGGTGATTACTGATGTTGAGCACCTTTTCACATGCTTTTTTGCCATTTGTATGTCTTCTTTAGAGAAATGTCTATTCAAATCTTTTGCCCATTTTTAAGTGGGATTATTACATTTTTTCCTGTAGAGTTGTTTGAACTCCTTATATATTCTTGTTATTAATCTCTTGTCAGATGGGTAGCTGCAAGTATTTTCTCCCATTCTGTAGGTTGTCTGCTTACTTTATTGATTCCTTTGCTGTACAGAAGCTCTTTAACTTGATGTGATCCCATTTGTCCATTTTGGCTTTGGTTGTCTGTGTAGTGGGGTATTACTCAAGAAACTTTTGCCCAGACCAATGTCCTAGAGAGTTTTCCCAGTGTTTTCCTATAGCAGTTTTATAGTTAGAGGTCTTAGAGTTAAATCTTTAATCAATTTTTATTTGAGTTTTGTATATGGCAAGAGATAAGGGTCACGTTTCATTCTTCTGCATGAATGGGATAACCAGTTTTCCCAGCACCATTAATTGAAGAGACTGTCCTTCCTCCAATGTATGTTCTTGGCACCTTTGTCAAAAATGCGTTCACTATAGGTGTGTGGATTTGTCTGGGTTTTCTATTCTGTTCCATAGGTCTATATGTCTGCTTTTATGCCACTACCATGCTGTTTTGAATTATACTATAGTATAATTTGAAGTCAGGTAATGTGATTCCTCCAGTTTTTTTCTTTTTGCTCGGGATTGCTTTGGCTATTCTGGTCTTTTGTAGTTCCATATGAATTTTAGGATTTTTTTTCTATTTCTGCAAAGAATGTTATTGGTGTTTTCATAGAGATTGCATTGAATCAGTAGATTGCTTTGGGTATTAAGGCGTTTTAACAATATTGATTCTTCCAATCCATGAATATGGAATAACTTTCCATTTTTTTGAGTGTCCTCTTGAATTTCTTTCATTGGTGTTTTATAGTTTTCATTGTAGAAATCTTTTACTTCTTTGGTTAATTTAATTCCTAGGTATTTAATTTTATTTGTGGCTATTGTAAATGGTATTACTTTTTAAATTTCTTTTTCACATTGTTCATTATTGACATATAGAAATGCTACTGATTTTTGTATGTTGATTTTATATCCTGCAACTTTATTGAATTCATTTAGCAGTTCTAATAGTTTTTTGGTGGAGTCCTCAGGTTTTTCCAAATATGTGATCATATCATTTGCATACAAGGATAACTTGACTTCTTGCTTTCTAGTTTGGATGACCTTTATTTCCTTCTCTTGTCTAATTGTTCTGGCTAGGACTTCCAGTGCACTAGGACTTGCCTAGAAATTGCAGTCCTTGTGGCCTAGACTGCCCCTCAAGTTAACCTAGGGCCCTAGAGCACTCCAGCCCATGGTGGGGAGGCTTGCTGGAACTCAAGCTCCAACCACTGGGATGAGCGATGCCCCTCTGGCTAGGGCCAGTCCAAATGCTCCCTCCATGGGCAGACACCAGCTGAGTACAGCCTGGTTCTGCTTTCCACCGTGACAGTGCAACACTGAGTTCAATGCAAAGCCACAGAATGACTGCACTCTCCCTCTCCCAACACAGAGATTCTCCATGCTGCACAGTCACTGCTAGGGGATGTGGGAGGAGTGGCATTGGTGCTTCAAGACTATCTTTCCTGCCCTCTTCAATGTCTCTTTCAGTGATGTAAAGTCAAAACCAGGTACTGTGATTGCTCACCTGATTTTCGGTTCTCTTGATGGTGCTTTTTGTGTGTAGTTAGTTGTTAAAATTTAGTGTACCAACAGGAAAGACAAATGGTGTAGGCTTCTATTCAGCCATCTTGCTCTCCCCTCTCATATATTTTTTCGTTTTTCAATTTTTCAACTATAATCATCTGGCTTGGCTTCAGCTGGATAGAAGTCTCTCTCTGCAGCCCCCTCCTTCCTGGAACTCTCCCTCATTCCAGACAAGTTGGCCTTGCAAAACTCCCATCAGTGTTGCCACAAGTCTTCAAAATCATCAGGCTCTGCTTGTATTCCTCTCCCTGCCCTAGTCTGTAAACTGCCTCTAGGCAGTAAGCTGGGGCAATTTTAGGTTTCACCTAATTGTTTCCTTTCTCTTAGAGATCACAGTCTTGCTTATGCTCTAATGTCTGAAAACTGTTATTTTGCATATCATGTTTTGTTTTCTATTAAGGCATCTTATATGAAAACAGAAGTTCAGTCCATTTTTATTAAAGTAAATATAAACAAATTACCAAGTTAAAGAAGGCAGAGAACCATATAAAGCCTCCTTTTTTCTAATATAAACACAATTATTACAATTATATATATAAGTGCAAATAACTTTATAGACTGATCGATATCTTGTATAATCTCAGGAATACTAAACATTTAGCAATTTAAGAAAAAAATCATTAAAGATATTTAATGCTTTGTTTTGCCAATGCTATTAGTGGAAAAATCCTAAGGCCTTTATAGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTGACAGAGTCTCTCTCTGTTACCCAGGCTGGAGTGCAGTGGTGCAATCTCGGCTCACTGCAACCTCTACCTCCCAGGTTCAAGTGATTCTTGTGCCTCAGCCTCCTGAGTAGCTGGGACTATAGACACCCGCCACCATGCCCAGCTAATTTTTGTGTTTTTAGTAGAGACGGGGTTTCAACATGTTGGCCAGGCTGATCTCGAATTCCTGACCTCAGGTGATCTGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCACCCTGCCTATAATTCTATTTTGGAAGCATTAAACAAAATGTTTTATTTACCTTTCAGAAAATGCTTAAGTTACAGATTAATGGCCATATTTTAAAATTCACCTATAAGTAGAATTTATATTGTTTTTCCATAATTGAATATGATTTTTTTGTCCAG
Seq C2 exon
ACATGAAGACCCTGTTACCAGTAAGCAAGCCAGAAATTCGGAGTTATTTTCCAGAAAGCTGGTTGTGGGAAGTTCATCTTGTTCCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106804-C5:NM_001735:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0182113=ANATO=WD(100=52.2)
A:
NA
C2:
PF0020717=A2M=PU(12.5=35.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)