HsaINT0024221 @ hg38
Intron Retention
Gene
ENSG00000106804 | C5
Description
complement C5 [Source:HGNC Symbol;Acc:HGNC:1331]
Coordinates
chr9:120989568-120991280:-
Coord C1 exon
chr9:120991191-120991280
Coord A exon
chr9:120989781-120991190
Coord C2 exon
chr9:120989568-120989780
Length
1410 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
TTTGATCTTTTTTGTTTCAGGAC
3' ss Score
11.37
Exon sequences
Seq C1 exon
GTACCATTAGCAGACGAAAGGAGTTCCCATACAGGATACCCTTAGATTTGGTCCCCAAAACAGAAATCAAAAGGATTTTGAGTGTAAAAG
Seq A exon
GTAAATTAACAAATGCCATTTTTATTTCTCATTTCACTTGGTGCTTCAAACAAAAATCAAATATCCTCATGATTATTCTGTTTCTCCACTTCCGTGTTCAGTAGCACACACAAATCTACCTTTAGGAGTGCTCCACCCCTACCCACCCCCACTTTCAAACCTTTAATCACTTTTCCCACTATCTTCTTCCAACGGCCTGATTTACATGGAGATGCATTCTCCTCCAATGGAAGGTAGGGACTGTCATTGGCTCAAAGATGTCTCTAAAATGGGGGTCCAGTTGCTTCTAGACTTAAAGAACTTTCCATGGTCTTAGTGGCCAGTCCCGCTCCAGAGAAGGCCTATGGCCTGCACATGGCCTAGCGAGAACAGCACTGCTCTGCTGAAGTACTGGTCCCAGAAGGGTTGTCTTAGTCCATTTATGCTGCCATAACAAAATAACAAAATTTATAAATAATACAAATTTATTTCTCACAGTTCTGGAGGCTGGGAAGTCCAAGATCAAGGCATCAAGAGATTGGGTGTTTGGCAAGGGCTGCTCTCTGTTTCCATGAGGATATATGTTGCTGTATCCTCCTGTGGCAGAAAGTGGAAAGGCAAAAGGGCAAAAAGGGGTGAAGAACTTCCTCTTACCTCGTCTATAAGATTATTAATCCCACTCATTAGGGTGGAGCCATCATAACCTAATCACCTCTCAAAAAGCCCCACCTTCTAATACTATCACCTTGGTGATTAGGCTTCAGTGTATGAATTTTGGAGAGACATATACATTCAAACCATAGCAGGGATTCTCCTCCCCTCGCATACATTTGCAGAAGTGATATTTGCACAAGTGACTAGGTTTTCCTTAGTCTCCAGGCTTTACAATTCAATAACATATTACCGAATGATAGAATGTCCTGACTACATTTTATCTCAGATAAAACCCTAGAATCACAAAATGTTAGTACTGGAAAGGATCTTTTTGATCATGTGCAACCCTGCTGTTGGATATAAAAGAAAGTGGCATGTCCAAGGTTGCACAGTGAATTATAGACAGTCATGTCAGCACTCCCTGTTCAGGCTCTTTGCTTTGCTTCCTGGAAGGGATTGGTAAATATGGTTTATAATGTCTAAAGCTAACAGGTTGAATGGCAACTAATTTGCCATGTTCTCTTGCAGCAATCAGTCCACTGTATTACATTACCTACCACCATATTTTAGTGATTTTTAAAGTCTTTTTTTTTTTTGTTTCTTTCAAATTCATGTTCCTAACCGGATCTTTTTTTCTCACCCCGTTTCTGAGAAGCAAGTCAACTGCCTAGATAAAAAGGGAAGAACCATCTCTAGATGGTTGTTCTTCTCTCTTGAGAACATACTGTTAGAAGTTAATAAAAAGCAATGTGTCTACTTTGATCTTTTTTGTTTCAG
Seq C2 exon
GACTGCTTGTAGGTGAGATCTTGTCTGCAGTTCTAAGTCAGGAAGGCATCAATATCCTAACCCACCTCCCCAAAGGGAGTGCAGAGGCGGAGCTGATGAGCGTTGTCCCAGTATTCTATGTTTTTCACTACCTGGAAACAGGAAATCATTGGAACATTTTTCATTCTGACCCATTAATTGAAAAGCAGAAACTGAAGAAAAAATTAAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106804:ENST00000223642:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF076789=A2M_comp=PU(0.4=1.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGCAGACGAAAGGAGTTCCC
R:
TTTTTCTTCAGTTTCTGCTTTTCAAT
Band lengths:
286-1696
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development