RnoINT0027418 @ rn6
Intron Retention
Gene
ENSRNOG00000018899 | C5
Description
complement C5 [Source:RGD Symbol;Acc:2237]
Coordinates
chr3:14083893-14085596:-
Coord C1 exon
chr3:14085507-14085596
Coord A exon
chr3:14084106-14085506
Coord C2 exon
chr3:14083893-14084105
Length
1401 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
CGGGTCTCTTTTTCTTTCAGGAC
3' ss Score
12.09
Exon sequences
Seq C1 exon
GTATTGTTAACAGACGAAAGGAATTCCCATACAGGATACCATTAGATTTGGTCCCCAAAACCAACGTCAAAAGGATTTTGAGTGTAAAAG
Seq A exon
GTAAGTTAATAAATCCAACTTACGGGCCAGGAGGGAAGCTCAGTTGATAGGGTGGCTGCCTAGCATGCATGAAGCCCTTGATACAGTGGTGCCTACCCACAATCCCAGCCCTGGGAGGTGGAAGCAGGACAATCAGAAATTGAAGGTCACCCACGACAACATAGTGAGATGAAGCCAGTCTGCGTAACCCTGTCTCAAAAACAGATAAATAGATAAATAAACCCCATTCTTTTTTTTTTTCCACTCAGCGCTTCAAACCAAAACCAAACGTGTTCGTTTTTTTCATCTCTGCACATGGGTTGGCTTCCAACAGATCTCTTCTATTCCCTTTGTCTTCAGACACTTGATTACTTTTGCAACTCCCTTCCCCTAATGCACTTGGAAATTATCCTGTGAGGATAGGGTACTGGTTGTTAGCCCAGTGACTTCTCTAGATCGGGGTGCAGCTGCTTCACACCCAACTTCCCTTGCTCTCAGCAGCCAGGCCTGTCTCCACCAAAGACTTTGGGGCCTGCAAATGGCCTTTAGGCACCAGCTTTACTTTTGGAGCTTCAGCCCCGGGTGGTGGGACTTGCTTAGCCCACCTCTGCAGCTATATTGAAACACCAGAGTCTGGGCAATTTATAAATTGGGAAAGGCTTGTGAGTTTTCCACGTCCAAGATCAAGGTGATGCAGTGCCAGGCAACAGTTGTTGTCTGTTTTTACCGCTGCTGTCTTGGTGGGTCACCCTCACATGACTAAAGGTAGACGAACAAAATGTCAAAGGGTAAATGGCTCCCCCACACCCTCCAGAAAGCTCGCCTTCTATCACTGTATGGATTAGGTTGCAGCAGACGGAGGGTCGGAGGCATTCAAAGCAGAACAGGGATTCTCTGCCCTCCAGGGTGTTTGCAGGAGGGGCGTCATTGGTGGGTTACCCAGGAGCTCTTGCCATGAGGTAACACATCACCAACAGGACAGAGTGTCCCGGCTGCATTTCATCTCAGATCAAATGTTGGAATCGCAGAGTATCAGAACTAGAAAGGGCCTTTTAGATCACGTGCCATATTGATATTAGACGTATAAGAAATTGGCTTGCCCAAAGTTGCACAGTGTCGCTATAGATTGAGTGGCCAGCGCCCTCTCTGTTCAGGATCTTTAACCCTGCTTCCCCTGAGGACTGGTCAGTGAGACTTATGACGTTGGCACCTAATTGTCTCGCCATCTGCCTACCACATTACCTATCTGCCACCAAGACTTCATGCTCCTAATCAAATCCAGCTTTCCCCCCTGATTTCTGTGACACAGGTAAACTGCTTCTATTAAAAAAGGGAAGAGACATTGGTCATTTCCTCTTCAGAATACACTGTTGGGAGTGGATAGCTAGTGGCTGTGTCCACTCGGGTCTCTTTTTCTTTCAG
Seq C2 exon
GACTGCTTATAGGGGAATTCTTGTCCACGGTTCTGAGTAAAGAAGGCATCGACATCCTAACCCACCTCCCCAAGGGCAGCGCCGAGGCAGAACTCATGAGCATAGTCCCGGTGTTCTACGTTTTCCACTACCTGGAAGCAGGAAACCATTGGAATATTTTCCACCCTGATACGTTAGCTAGAAAACAGAGCCTGCAGAAAAAAATAAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018899:ENSRNOT00000025534:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF076789=A2M_comp=PU(0.4=1.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTAACAGACGAAAGGAATTCCCA
R:
TTTCTGCAGGCTCTGTTTTCT
Band lengths:
286-1687
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]