HsaINT0024245 @ hg19
Intron Retention
Gene
ENSG00000106804 | C5
Description
complement component 5 [Source:HGNC Symbol;Acc:1331]
Coordinates
chr9:123785682-123787858:-
Coord C1 exon
chr9:123787732-123787858
Coord A exon
chr9:123785798-123787731
Coord C2 exon
chr9:123785682-123785797
Length
1934 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
GATGCTTGCCATTTCCTTAGGTG
3' ss Score
8.43
Exon sequences
Seq C1 exon
TTGATAAATGGAATTGCTCAAGTCACATTTGATTCTGAAACAGCAGTCAAAGAACTGTCATACTACAGTTTAGAAGATTTAAACAACAAGTACCTTTATATTGCTGTAACAGTCATAGAGTCTACAG
Seq A exon
GTAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATACTTTCTTTTGAAAAATATTTAGACAGAATATTAAAGATATAAATAATTTCCAATTTCTATAATTATTTCACATTGTATTTTCTTTCATAGTTAAATATAATTATAAGAAGTAGACTTTTATATAGTTATAAAAAGGCAGTAGGGCTCTGCTTCTTTTTAGTCATTGGACAAGCCATTGGGTCCCTATTACCTCCACTTCTACTGCAAAAATGGGAAAACAGTACCCAATTCATGTCCAAAGTAGTTCTGCAGGCTCTCTGCCTTGACCATTTGGCACCCTAGTGTCCTCACGTGGTGAAAATCAAAACCAAAATAAGATTATGTGTGTAAAACTATTTGATAAAGTACTATACAAATAAAAGTTATTACTATTATCATTATTATAGTCTACATAATGATGGAGTCAAACTGAATGTTTCCTAAAGCCTAAAGTTTTCAACATTATTTTAATGTTTCTTCTTTTTATTTTTTCCTCAACTTATTTTAAATAAGTTCAGTTTAAGCAGTATCTATGAGATATTTAAAGTATTGCCAAACAGACAGGCTTGCAAACATTAATGATGTATGATGCCAGCACTAAAGTGGCTTACAAATTAGCATCAGGTATAAGACAGGTGAAGAAAGAACTGTTGCAAGAAAGAATTCCATATGAGCTCTAAGCAAAATATTAATGCAATAGGATTCAGAGGAAGGTGAGCTTCTAGATGATTGTTGAGCAAGCAAGAACAGTGTTGTGAAGATGATCAGTCTTGAAAAATAATTAGGGTTTTGAGGCAGAGTTGCTAGACAGGGTGAAATAGAAACCCTCCAGAGAGAGGGCAGATGAAGAAGAGTAGATGGTGAAGCTTAATCTTTGAGGACAGCAGATCATCCAGTTTGGCTAAAATATAGGATATGTATAGAATGTATTAGAGATGTAATATTGGAAAGGAGTTTGGGAATATTAAAGCTTCAAATGTTATTCTTAATAGTTTAACTTAATCTTTACCTGGAGGATAACATTATTGGGCTCTTGCCAGTTGTCTGGTCATGTCCCCTTCCCTCCCCCTCCCCCCTCCCGCTCCCCTCCCTCCCCTCCCCCTCCCCTCCCCCTCCCCTCCCCCTCCCCCCTCCCGCTCCCCTCCCCTCCCCCTCCCCTCCCCCTCCCCCCTCCCACTCCCCCCTCCCCCTCCCCCCTCCCCTCCCCTCCCTCCCTCCCCTCCCGAGTCTTGCTCTGTTGCCCAGACTGGAGTGCAGTGGTACAGTCTCAGCTCAATGCAACCTCCGCCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTACAGGCATATACCACCATGCCTGGCACTTTTTTTGTTTTCGTTTTTTAGTTTTAGTAGGGATGAGGTTTCACCATGTTGGCCCGGCTGGTCTCGAACTCCCTTTCAGGGTTCTTTCTATATCAAGCTCCCTTTTTCTGATTTCTCTCTATGTATCTATGCTCTGTGAACACCAACCCCCATCCCCCACCTCCACTTCTGTAAGGCTCAGTTTCTGGCCTGACCCTTCCCTCTCTCCTCAATCCCTTGAATACAGTCAACTGAAACTCAGGCCACTGATGAAAAGTGGTGTCCCTTCCTGGCATCCTTCCTCAGTCCAGTCCTGTAGCTCTACTTCTCCAAGGGCTTCTCTACATACGAGCTTGTGCATAAGGCCTTGGAAACTCCTGAGGTCTAAACTCTTCTCTGCTGTGCCCCTCTGAAGCAAGACCTATGTCCTACTTACTACTGGTAAATGAATGAATGCAAGAATGGAGTGAGTGAATGAATAAGTCTGTGGAGACATATAGAGATGAAATGGATATCCATACAGATCATGATACTCCTAAAAACTGTCAACATGATGCTTGCCATTTCCTTAG
Seq C2 exon
GTGGATTTTCTGAAGAGGCAGAAATACCTGGCATCAAATATGTCCTCTCTCCCTACAAACTGAATTTGGTTGCTACTCCTCTTTTCCTGAAGCCTGGGATTCCATATCCCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106804-C5:NM_001735:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATAAATGGAATTGCTCAAGTCACA
R:
TGGAATCCCAGGCTTCAGGAA
Band lengths:
230-2164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)