GgaINT0126362 @ galGal4
Intron Retention
Gene
ENSGALG00000001565 | C5
Description
complement component 5 [Source:HGNC Symbol;Acc:HGNC:1331]
Coordinates
chr17:8336463-8336783:-
Coord C1 exon
chr17:8336657-8336783
Coord A exon
chr17:8336579-8336656
Coord C2 exon
chr17:8336463-8336578
Length
78 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
AAAGAGACATATTTTGTCAGGTG
3' ss Score
0.58
Exon sequences
Seq C1 exon
CTTACAAATGGAGTTGCTGAGATCAATTTTAACAGTAAGAAAGCAGTGAGTTCTTTAGGGTTTCAAAGCCTAGAAGAATTGGATGGGTCTTATTTATACATTGCAGCATCAGTAGTGGAGTCTATGG
Seq A exon
GTAAGTTGCTTTCTGACTGGTTTCAAATGAAATTAATGGCCCTAGGATGTAATTATTAAAAGAGACATATTTTGTCAG
Seq C2 exon
GTGGCCTCAGTGGTGAAGTGGAATTTTCTGAAGTCAAATATGCTGTATCTCCTTACACACTGAGTTTGATTGCTACTCCTCTCTTTATAAAGCCCGGACTTCCATTCTTCATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001565:ENSGALT00000002379:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTAGAAGAATTGGATGGGT
R:
TGAAGAATGGAAGTCCGGGCT
Band lengths:
172-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]