RnoINT0027402 @ rn6
Intron Retention
Gene
ENSRNOG00000018899 | C5
Description
complement C5 [Source:RGD Symbol;Acc:2237]
Coordinates
chr3:14112736-14113922:-
Coord C1 exon
chr3:14113896-14113922
Coord A exon
chr3:14112853-14113895
Coord C2 exon
chr3:14112736-14112852
Length
1043 bp
Sequences
Splice sites
5' ss Seq
TCGGTAGGG
5' ss Score
6.76
3' ss Seq
CAGTGCTTGCTGCCCTTGTAGGT
3' ss Score
-23.12
Exon sequences
Seq C1 exon
ATTGCATGTACAGTCACAGAGTCTTCG
Seq A exon
GTAGGGGGCCGCTGTGTGTGCTGTGTTATGTGTGTGGTGTGTGTGTGTTGTGCTATGTGTGCTATGTGTGGGTGTGGTGTATGTGATGTGTTGTGTTCTGAATATGTTCTGTGTCTGTGTGTAGGTGTGTGTATTCGTGTGTGTCTGCTGATCATGTGTATGTGGTCTTGTGTCTATGTATTTGGGTGTATAGTATATATATGTGTCTAGTGCCTGCTACATGTGTGTGTCTCTATGCTGTGTTGCCATTGTGTGTGTCTGGATATGTGTGTGGTGTGCTGTGTGTATATGTGTCTGTGCATCGCTGCAGTGTGTGGGTCGTGAGAGGAGAGTGGTGGGAGGGAGGAGGGAGAAAGCGGGTTCCCTCCACAGGGGCAGAAAGAAAGGGCTAGGAGTGAAGCCTATCATCTTCCAGGAAGCCACATTGCTTGGTCTGAATATTTATTTTCTTTATGAGAACACGTAGCTGGCCTTCAGGAATGCCAGAAGAGGAGGGAACGCAGATCCATTACAGTGGTTGTGAGACACATGTGGGTTGCTGGGAATTGAACTGTGGTTGCTGGGATTGAACTTAGGACCTCTGGAAGAGCAGTCAGTGCTCCTTCACCCTCGGCATCTCTCCAGCCCTACTATTGAGCTCTTTAAATAGCCCATCCGGACTCTCTGGATCAAGCTGATTCTTCTCCAGTTGTCTCTGGGTCCCAGTGCTCCATCTTGGACACCTGTTGAGGCTCAGCCTCCGGGTTCCCTGCCTCTCCCTTTGATCCCTTGAACACATTCAACTGAACCTGAACCTGGGGCCGCTGCTGAAGGGCGGAGTCCTCTTTCAAATCCCCCAGTCTTGTGCTGTAGCCTGACTTCCGGAGATCCATCTTTCTACACGGGCTGTGGAAGCTCCCGATTCTTGTCTGCACTTTCCCCCAGTTGGCCAATGAATGAAGACAGGAATGGGTCAGGGGATGGATAGCACAGAGACCGACAGATGTCCTACAGCCCGCCATCATCTTTCCGGAAACATTAACTCAGTGCTTGCTGCCCTTGTA
Seq C2 exon
GGTGGGTTTTCGGAAGAGGCAGAAATTCCTGGCATCAAATACGTCCTCTCTCCCTATACACTGAATTTGGTCGCTACCCCTCTTTTCCTGAAGCCTGGGATTCCATTTTCCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018899:ENSRNOT00000025534:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]