BtaINT0029326 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012210 | C5
Description
complement C5a anaphylatoxin precursor [Source:RefSeq peptide;Acc:NP_001160088]
Coordinates
chr8:112308442-112312108:-
Coord C1 exon
chr8:112311982-112312108
Coord A exon
chr8:112308558-112311981
Coord C2 exon
chr8:112308442-112308557
Length
3424 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
AATTTTTGTCATTTCTTTAGGTG
3' ss Score
9.46
Exon sequences
Seq C1 exon
TTGATAAACGGAATGGCTCAAGTCACATTTAACTCTGAAACAGCAGTTAAAGAATTGTCCTATGAAAGTCTAGAAGATTTAAACAACAAGTACCTCTATATCGGTGTGACAATCATAGAGTCTACAG
Seq A exon
GTAAGCTTGTTTTCCTTCTTAAACTTTCTCTTGGCAAATATTTGTTGTCGTTTATTTGCGAAGTCGTGTCCGACTCTTTTACAGCTCCATGAACTGCAGCCCACCAGGCTCCTCTGTCCATGGAATTTTCCAGGCAAGAATAGTGGAGTGGGTTGCCATTTCCTTCTCCAGGGGACCTTCCTGACCCAGGGCTTGAACCTGCAGCTCCTGTGTCTCCTGCATTGGCAGGCAGATTCTTTACCACTGACTGAGCCACCAGAGAAGATTCCCTGGAGGAGGGCATGTCAACCCACTCCAGTAGTCTTGCCTGAAGAATCCCATGGACAGAGAAGCCTGGCGGACTGTAGTCCATGGGCTCACAAAGAGTTGGATATGACCGAAGCAACTTAGCACGCACCAGAGAAGGGACTTTCTCTTGGGAAATATTTAGACAGCATATTAAAGGTATAAATATTTCATGCAATTTCTGTTTTCCTTTGCATGAAATACCACCTTTGTTTGTTTTTAGCACCCCCTCTTCCCCAAAAAGAAAAAAAAAAAAAACAAGGCCTCCAGGTATCAAGATCTCATTAGGATTTTCTGTCCTGAATTTTTTCAAGCAAAATCTAGAAAATGTGAAAGCCTATTTAGATTTTATACACTCTCTGAAATGTGATTTGTTAAGATTCTTATATTTGGGCCTCTTATAATATTTTAAATGAGATCTACCAACTCATGAGAATATTTTTCACAGATATCTTTAGGCCTTTATTAGAAAGCTATTTTCCCCCTGTTGGTACATTTGGTTACCTTATTTTGCTGTTTGTGTCAGATTATGGAAAGCTCACAGGGGTGTATTTTGGAATCATTTGCTGAGTCATTTCCTCAAATCATACTCCATTGTATCAGTTAATATATAGTTTTAAATGTATGTATTATAAATATCTGTAACCAAATCATTTGAAGGCTTGATAAATTTTTAACAAAGTTTGTACATTTTTATGAAAGTTACTAGTAATGCTTTACTAAGTAGTGCAATGAATTTTTATTTTTAATCCCTGTGCCCAATTTTGGAGTTGAGAGGGTTGTTGGTAATAAATGTATGATGTACACTTAAAAAAAAAAAAGGTATAAATAATTAGTACATTCTTTCACATTTTACTTCCTTTCATAGTTAAATTTTACTTTTCCATCATTAAAACTGGGATTGGAGTGTAGCTTTGTCACTCCCTAGCCACTGGGTCTCTACTGTCTTGATGTCAAGAAGGGATGACACCCGCCCATTTAACAGTCCAAGTGGCTCACAGCCTGTCTGGCTTGAACATCTGGCACCTCAGTTTTCTCACCCAGGAGGAATCAAAACCAAAGAGATTATGTGTGTAAAGACATTTGGTGAAGTACCATGCAAACGAAAGTTACCACGACTACCACAGTTTTATCCACTTAGCTGTATGATGATAGAGTTGAACAAAGTACATCATAAAGCCCTTTTCTTCTGGAATAGTAATTCTATCCAAAACTGGAGGTAATGTTTCTAACATGAGTCCAGTAACGGTATATGCCCCTCAGTGTTACGGCGGGAATGAAAGCGTCAGTGTGCGCAGAGCACTCTCACCAGCACCTCCTTCCCCCTTTCTCCTTGTCCTCCCCTCCTCCCCACCCCTCCTCCCCTCCTAGTTCTCCGCCCCACCCCCCTGTCTCCATCTTCCCCTCCTCCTCTTCCTCCCCGTCTTCCCCCTTCTTCTTTCTCTCCTCCTCACCACCTATTTTCTTTCCTTAGCATTCTTAATGTCTTGTCTAGTACTCTTAACCCTCACTCCAATGGTTTTAATAGTTAATAATTATTACCCCCAGTTGGATTACTTTGTCTTACTTCTGATATATCTTGATTACTAATGTACCTTATATTTGCAGGTCTATATTGAACCCCCATGAACAAATAATTTAAACACACTAAGTCCATTTTTTTAAAAAATAAAATGACTGTTACACTAGAAGATTCCTAAGTCTCCTTCTACCTCTTTAAATTTGTCCTTCCAGGGTAGCAGAATGAAGAACTGAGGTAATTACAGAGGTATTAAGCGCTTTGCATACATCAGATTATCAGTACATGCGGGAGAATGATGATGACTTTAGACTCCCTGCCCTCTCTATATTGTTGACATTATTTTAATGCTTCTTTCTTACTGCTATTTTTCTCAACTTATTTAAAATAAATTCAGTTTAAGCAATATTTATTAGATATGCAAAGAGTGCTGCTGAATGTGCAGGCTTACGAATGTTAATGATGCAGATTTCAGTACTCAAGCGGCTTGCAAACACGCATCAGCTTAAAGAAAAACAAAGAACTCTTTCACCAGAAGGGATTCCACGTGTGCTCCGAGCAAAGTGCTTAATGCTACTGACCTTCAGAAGCAGGCGAGCTCCTAGATGACGCTGAGCAAGCAACAAAGGTGTCCTGGAGCTGACGGGCCATGTCTTGAAAGACCAGTAGGCTTTTGAGGAAGGGGTGACAGGCAGGGTGAAGTGGGGCACTCTTCAGAGAGGGGACGTGCCAAGGGTGACCGCTGAGAATAGCAGATTACTCGTTGGCTGAAGTATAGGATATATATGTAGGGGTGCATATGTGCACGCTAAGTCACTTCAGTCGTGTCCAACACTTTGTGGTCCCACGCACTGAAGCCCATCAGGCTCCTCTGTCCATGGGATTCTCCAGGCCAGCATACTGGAGTGGGTTGCCATGCCCTCCTCCAGGGGCTCTTCCTGACCCAGGGTTCGAAACCATGTCTCTTCTATCTCCTGCATTTGCAGGCGCGTTCTTTACCACTAGCGCTTACCTGGGAAGCCCATATGTGGGAGTATCAGGGATATAATCCTGGAAAGAAGTTAGGGATACTAGAGCTCTGTATATTATTCTGATAACTTATTATATACAAGTTTTAGCTGAAGGGTAACACCATTGGGTCTTGCCAGTAGACCCTCTGGGTTCTCTCTACCTGAAGCTATTTTTTTATGTTTTCTCCAATTCTCTCTATATCCCTGCTCCCTAAAGATGACCTCCCTGTAAGGCTTAGTCTCTGGCCGACCCTTTCTTCTCTCCTTAATGCCTTCTATGTATTTAAATGAAACTCAAGCAACTGGTGAAAAGTGGCGTCCCCTCCTCAGATTTCTCCTCAGTCCGATCCCACTGCGCTACTTCCACAAGGGCCATCTCTACACAGAAGCCCTGAGCATAAGGCTTTGGAAACTCCTGAGGAGGGTCTAACTCTTCTCTGCACTGCCCCTCTGAACCAAGACCCGTGTCTACTTGCTGTTGGTAAATGAATGAGTGCAGGAATGGAGTGAATGAATGAATGAATGAGTGGGTCTGTGGAGACACATGGAGACCGACATAGCTCCCCACACAGATCAGTACACTTCTAATAAATTTTTGTCATTTCTTTAG
Seq C2 exon
GTGGATTTTCTGAAGAAGCAGAAATTCCTGGCATCAAATATGTCCTTTCTCCCTACAAACTGAATTTGGTTGCTACCCCTCTTTTTGTGAAGCCTGGGATTCCATATTCTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012210:ENSBTAT00000016204:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]