HsaINT0027415 @ hg19
Intron Retention
Gene
ENSG00000214711 | CAPN14
Description
calpain 14 [Source:HGNC Symbol;Acc:16664]
Coordinates
chr2:31414801-31416160:-
Coord C1 exon
chr2:31415997-31416160
Coord A exon
chr2:31414965-31415996
Coord C2 exon
chr2:31414801-31414964
Length
1032 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
CTTGCTGTGTTCTGCTCCAGACA
3' ss Score
8.74
Exon sequences
Seq C1 exon
GATGACGCTGCAGGACTTTAAAACACATTTCGTGCTCCTGGTTATCTGTAAACTGACCCCAGGCCTGTTGAGCCAGGAGGCGGCCCAGAAGTGGACGTACACCATGCGGGAGGGGAGATGGGAGAAGCGGAGCACAGCTGGTGGCCAGAGGCAGTTGCTGCAGG
Seq A exon
GTGAGCATGTGCACAGGAGCAGGGCTCTCAGGGTGAGGTTGTGGGCGGGGGTGTCAGAATGACTGCACAGGGGGTTGCAGCACGAATTCTGCATTGGCTGAGTGGGGAGGAGGCTCTGCTTGCCTCACTGTGTGTTGGGGCCCTGGGCTATAACCACAGGGAAGATGGGGTACCTTTGGACCCAATGTGCACCAAGGCAGAGTCCTCTCAGTCAAGCTGCCAGCCTGTGGGGCTGCATCTTCCCAGAGGGTTGCCCTGTCGCAGTCAGCACCGGGGGTCACAGGCACACAGGCATGATAAAAGCAGGGGCAAGGGAGAATCTTTTTTAGTTTTAGGACAAGACCACTGAAAACACTGAAGTAACCACCCCCTAACTAGGCAGGATTGAAATAGAAATTGTATCTGGTCTTTCTCACCTGGAGCCTGGGAGAAACACAAACCCAGGGCTTCCCAGGATCACTAGATACGGGAGACAAACCTGTCTGGACTCCCAAGATGGGACAGGTTTGGTGACCCTGTCCCTTCCTCCACTGTGGAGATAGTGAGCCATCCCTTTTGAAGGCAAGGCCTGTGGGGTGTGACCTCAGCAGGCCAGGATGGCCTTAGCTCTGGAGTCCCCCTTTTGACACAGTATTTCCCCCATAGTCTGAAGCTGACCTTAAGGTAAGGTTTTGCGTCTATTAAAATGCAAAGGCCCCTAGGATCATGGTCACCTCCCCAGGGAGTTAATACAATTGCTTACTCAGGTAGCACATGCTTGTGGGGTATAACACCTGGGCCAGGCACTGAGCAAGACAAAGGCTACAGTGGTGGGAACAACTCCAGTCAGTGTGTCTGGAGAAGACCTCCAGGTGGAAGAGCAAGGTGGGAGGGCGTAAATCCAAGGTTGAAGGGACCCCGACTCTGTCCCAGTGGGCCTCAGGGTGTCAATCCTGGCAGAGGCGTCCTCAGACTGTTCACCTCTTAGTGGTTCGGCAAGCAGGATGCATGGGGATCCGGGGCCCATTCTCACCTTGCTGTGTTCTGCTCCAG
Seq C2 exon
ACACATTTTGGAAGAACCCGCAGTTCCTGCTGTCTGTCTGGAGGCCCGAGGAGGGCAGGAGATCCCTGAGGCCCTGCAGCGTGCTGGTGTCCCTGCTCCAGAAGCCCAGGCACAGGTGCCGCAAGCGGAAGCCTCTCCTCGCCATTGGCTTCTACCTGTATAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214711-CAPN14:NM_001145122:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PD(6.5=33.9),PF0106717=Calpain_III=PU(16.4=44.6)
A:
NA
C2:
PF0106717=Calpain_III=FE(35.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACGCTGCAGGACTTTAAAACA
R:
CCTATACAGGTAGAAGCCAATGGC
Band lengths:
326-1358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)