HsaINT0027434 @ hg19
Intron Retention
Gene
ENSG00000214711 | CAPN14
Description
calpain 14 [Source:HGNC Symbol;Acc:16664]
Coordinates
chr2:31415997-31417349:-
Coord C1 exon
chr2:31417275-31417349
Coord A exon
chr2:31416161-31417274
Coord C2 exon
chr2:31415997-31416160
Length
1114 bp
Sequences
Splice sites
5' ss Seq
CTGGTATTG
5' ss Score
3.14
3' ss Seq
TTTCCTTCTTCTCTCCACAGGAT
3' ss Score
14.53
Exon sequences
Seq C1 exon
TTCAAGTAAATGGGAGCTGCTGAGCCCCAAGGAGAAGATTCTGCTTCTGAGGAAAGACAATGACGGAGAATTCTG
Seq A exon
GTATTGGACTTAGGGACTTGGACAAATGTCCTGGCCTACATTTGAAAACCCATCCAGCAGACATTTATTGGATGCCTTATGGGTGCCAGGAACTTCATGTACAGAGATCAATAAGGCACCATCCCTTTAGGAGCTCACGGTCTAGCAGGACAAACAGTGCCTGTAAATAAACGGTCACTGTCTTTGTGATGAGAGTAGAGGCCACTAGGGTGGAGCTCAGCGAGGGCTCAGCCAGGCTGTTTCCTCCTCTCTGGCTTCCTCTCTGCTCTCTTGCTCAGTGTATTCAAAACAGGTTTTGCCTTTTTTGTCCTGAAAAGGCCATGAGGTAGGAAGAGACTGCAAAGTCTTGTCATAGGATAGGCCCCTGACCAGTGCCCTCCAGAGCAGAGTAACACTGCCACCCACTCTGGGGCTGCTCACCTCATTTTTTGAAAGGCCACCAAGACATCCTGAGCTGATGCTGCTTCTAGGTGTCTGAAATGGACCCATCAGTTCTCCTTTGCTTTTGCTCACCACCGTTACTGTGAATGTCAACCCTCGTTCCAAGGACTGCTCCCATTAACCATCCAGTACAGCCTGCCACCGCCCTCTCCCTTTGGAAGGTCTTTCACTGAACTCAAGCTCTGCAAATTCCTGTTTTTTCCACTTTATGGTTAAGTAAACTGAGCATCAGACAGCTTAAATAGAGTGTCGCAGGCCACAAGTTAGCAAGTAGGGGCAAAGATCTTCATGAATTAATGATTAAGAACTGATATGTAATTCTTATTGAACATTTATAGATAAAACAAATGACTAGTTAGCTATGCCTTAATTCAGCTGCTATCACCATGATTCCAGAAACTGGAACATCTCCCCCGGTCAGCCATGTGGCCGGCTGCTTCCAGCCAGAGGGTGGGGCTTCTCAGTAGCTCCAGCCCCCCACGATGGACCCTCACAGGGATCTAGCCAGCCCCAGCTGATGTGCCTATCGTCAGCTCAGCTCTGCACAAGAGCTGGTGTCTTTGTCCATGAGAGGGCTGGGATGCCCACTGCTCCGTTTCACCCTCCCCATGGGTCCTGATAACTAGGCGTTATCTGGTCCATCTCTTTGTGCTTTTCCTTCTTCTCTCCACAG
Seq C2 exon
GATGACGCTGCAGGACTTTAAAACACATTTCGTGCTCCTGGTTATCTGTAAACTGACCCCAGGCCTGTTGAGCCAGGAGGCGGCCCAGAAGTGGACGTACACCATGCGGGAGGGGAGATGGGAGAAGCGGAGCACAGCTGGTGGCCAGAGGCAGTTGCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214711-CAPN14:NM_001145122:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(8.5=100)
A:
NA
C2:
PF0064816=Peptidase_C2=PD(6.5=33.9),PF0106717=Calpain_III=PU(16.4=44.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGTAAATGGGAGCTGCTGA
R:
CTGGCCACCAGCTGTGCT
Band lengths:
222-1336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)