HsaINT0028668 @ hg38
Intron Retention
Gene
ENSG00000171097 | KYAT1
Description
kynurenine aminotransferase 1 [Source:HGNC Symbol;Acc:HGNC:1564]
Coordinates
chr9:128836802-128837813:-
Coord C1 exon
chr9:128837685-128837813
Coord A exon
chr9:128836923-128837684
Coord C2 exon
chr9:128836802-128836922
Length
762 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
CTCTCCTTGGGCATCTGCAGGTG
3' ss Score
8.05
Exon sequences
Seq C1 exon
GGTCCCATCCAGAATGGAGAACTGGGTTCCAGCAGCAACTGGCAGCTGGACCCCATGGAGCTGGCCGGCAAATTCACATCACGCACCAAAGCCCTGGTCCTCAACACCCCCAACAACCCCCTGGGCAAG
Seq A exon
GTACTGGAGGGACCTCCTTCCCTGGCCCCCTGCGGACCTGGTCATGTCTCCTGCACTGTTACTGAGTTGCTGCTGTGGGGCCTCCGTTTCTTCGTTTGTGTGTGGGAGGGCCACACACAATGAGCACTGAGGACCAAGACTCCAGAGGTCCCAGGACAGGGGCAAGAATCCCCAGGGAAGGCCTGAGGGCTGGGACAGTGAACTGGGCTGGGAGCCACCATCACTTCCCAGTGACCCTGGAATAGTGACTATGCCTCTCGAAGTATCTCATCTGTAATGTGGGAACCTGAGGGAACTGACCTCATGGTCAGTGTTGCAGGGATCCAATGTGATGGTGCAGAACAGCCCTTAGCACTGGGCTTGGCTGTATTCGCCATTTATTTATTTTTTTGAGACGGAGTCTCGCTCTGTCTCCCAGGCTGGAGTGCAGTGGTGTGATCTTGGCTCATTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCACCCGCCACCATGCCCAGCTAATTTTTGTGTTTTTAGTAGAGACGGGGTTTCTCCATGTTGGCCAGGCTGGTCTTAAACTCCTGACCTCCAGTGTTCCGCCCGCCTCGGCCTCCCAAAGTGCTAGGATTACAGGCGTGAGCCACCGCACCTGGCCGCAGCTGTGTTCTTTAACCTCTCTGAGTAGGCCTCTGTGTTTGGGGACGGTCCCAGCTGCAGGTCTGTGCTCTCCTTGGGCATCTGCAG
Seq C2 exon
GTGTTCTCCAGGGAAGAGCTGGAGCTGGTGGCCAGCCTTTGCCAGCAGCATGACGTGGTGTGTATCACTGATGAAGTCTACCAGTGGATGGTCTACGACGGGCACCAGCACATCAGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171097:ENST00000302586:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(10.8=100)
A:
NA
C2:
PF0015516=Aminotran_1_2=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAATGGAGAACTGGGTTCC
R:
CAATGCTGATGTGCTGGTGC
Band lengths:
242-1004
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development