RnoINT0081183 @ rn6
Intron Retention
Gene
ENSRNOG00000016097 | Kyat1
Description
kynurenine aminotransferase 1 [Source:RGD Symbol;Acc:1306912]
Coordinates
chr3:8754341-8754995:-
Coord C1 exon
chr3:8754867-8754995
Coord A exon
chr3:8754462-8754866
Coord C2 exon
chr3:8754341-8754461
Length
405 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCC
5' ss Score
9.16
3' ss Seq
TGTGACCTTGGCCCCCACAGGTA
3' ss Score
9.8
Exon sequences
Seq C1 exon
AGCCCTGCTCCTAAGGGGAAACTGGGAGCCAGCAATGATTGGCAACTGGATCCTGCAGAACTGGCCAGCAAGTTCACACCTCGCACCAAGATCCTGGTCCTCAACACACCCAACAACCCTTTAGGAAAG
Seq A exon
GTACCCAGAATCCATTCGGAGACCTCTGCAAGCACACTTTTCCTTCAGGTCTTGAGTGTGGACTCTCCCAGTTTCCTTGCATGAAGTGGGAAGGCTGAATGCCTGAAACTCTGAGGACCAATCCTCCCAGAGATGTGAAGGCTTGGGTGCATGGGCTGAGGGCCTGGGCACTTCCTGGTAGCTTTGAAACAGTGGCTTTATCTGTCTGTGCAGTGGGATCCAGACATAGCCACTCCCACAAGGTCAGGATGGCAGAGGTAGATGCAATATGGACCAATGTTGCATCTCAATATTACAAAGAGATGATTCAGAGAAGCCCCGAGACCTGGTCAGGTCCTGTGCTCTGAGCAGGCTCTGCACTTGGGGACAGTCCCAGCTGCACACCTGTGACCTTGGCCCCCACAG
Seq C2 exon
GTATTCTCTAGGATGGAGCTGGAGCTGGTGGCTAATCTGTGCCAGCAGCACGATGTCTTGTGCATCTCTGATGAGGTCTACCAGTGGCTGGTCTATGACGGGCACCAGCACGTCAGCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016097:ENSRNOT00000021865:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(10.8=100)
A:
NA
C2:
PF0015516=Aminotran_1_2=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTCCTAAGGGGAAACTGG
R:
CGATGCTGACGTGCTGGTG
Band lengths:
246-651
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]