HsaINT0028684 @ hg19
Intron Retention
Gene
ENSG00000137944 | CCBL2
Description
cysteine conjugate-beta lyase 2 [Source:HGNC Symbol;Acc:33238]
Coordinates
chr1:89426850-89427189:-
Coord C1 exon
chr1:89427064-89427189
Coord A exon
chr1:89426971-89427063
Coord C2 exon
chr1:89426850-89426970
Length
93 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
CTTTCCTTTATTATGTGTAGGTG
3' ss Score
8.62
Exon sequences
Seq C1 exon
AAACCTGTTTATGGAAAAAGATGGTCTAGTTCTGACTGGACATTAGATCCTCAAGAACTGGAAAGTAAATTTAATTCCAAAACCAAAGCTATTATACTAAATACTCCACATAACCCACTTGGCAAG
Seq A exon
GTAAGCAAGTCTCATCTCCTTATACAGTCTTCTGACCTATCATTTTCTCACATGTTGAATAATTGGCTGTGCTCTTTCCTTTATTATGTGTAG
Seq C2 exon
GTGTATAACAGAGAGGAACTGCAAGTAATTGCTGACCTTTGCATCAAATATGACACACTCTGCATCAGCGATGAGGTTTATGAATGGCTTGTATATTCTGGAAATAAGCACTTAAAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137944-CCBL2:NM_001008661:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(10.7=100)
A:
NA
C2:
PF0015516=Aminotran_1_2=PD(19.1=92.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGGTCTAGTTCTGACTGGA
R:
CGCTGATGCAGAGTGTGTCAT
Band lengths:
178-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)