BtaINT0032438 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000505 | CCBL2
Description
Bos taurus cysteine conjugate-beta lyase 2 (CCBL2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075370]
Coordinates
chr3:55127994-55128335:+
Coord C1 exon
chr3:55127994-55128119
Coord A exon
chr3:55128120-55128214
Coord C2 exon
chr3:55128215-55128335
Length
95 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GTTTCCTTTCATATGTGTAGGTG
3' ss Score
8.17
Exon sequences
Seq C1 exon
AAACCTGTTGATGGGAAAAAATGCTCTAGTTCTGACTGGACCTTAGATCCTCAAGAACTGGCAAGCAAATTTAATTCCAAAACCAAAGCTATAATACTAAATACTCCACATAACCCCCTTGGCAAG
Seq A exon
GTGAGTCTTTGAACTCTTTATGCATCTTCTGATCCATCATTCTCTCACACGTTGAATAATTGGCTCTGCTCTTTTGTTTCCTTTCATATGTGTAG
Seq C2 exon
GTGTATACCAAAGAGGAACTCCAAGTAATTGCCGACCTTTGCATCAAATATGACACACTCTGCATCAGTGATGAGGTTTATGAATGGCTTGTATATACTGGAAATAAGCATTTTAAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000505:ENSBTAT00000000643:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(10.6=100)
A:
NA
C2:
PF0015516=Aminotran_1_2=FE(10.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCTAGTTCTGACTGGACCT
R:
TCACTGATGCAGAGTGTGTCA
Band lengths:
176-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]