GgaINT0038342 @ galGal3
Intron Retention
Gene
ENSGALG00000006188 | CCBL2
Description
NA
Coordinates
chr8:15843012-15843344:+
Coord C1 exon
chr8:15843012-15843134
Coord A exon
chr8:15843135-15843223
Coord C2 exon
chr8:15843224-15843344
Length
89 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TTTACTTTCTTGCATCCCAGGTA
3' ss Score
9.38
Exon sequences
Seq C1 exon
AAAAATGGTGGGAACTCTGCATCTAGTGCTGATTGGATCTTAGATCCAGCTGAACTTGCAAGTAAATTTAATTCCAAAACAAAAGCGATTATTCTGAATACCCCACACAACCCTATCGGCAAG
Seq A exon
GTAAGAGTTCTGCTTTAACACTACTGTAATTTCAGAGTATGCCTTAAATACTGTGATTAATGCATTGCCTTTACTTTCTTGCATCCCAG
Seq C2 exon
GTATTTACCAGAGAAGAACTCCAAGTAATAGCTGATCTCTGTATTAAACATGATACTCTATGCATCAGTGATGAGGTGTATGAGTGGCTGGTGTACAAGGGAAACAAACACATAAAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006188:ENSGALT00000009984:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(10.5=100)
A:
NA
C2:
PF0015516=Aminotran_1_2=FE(10.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCCAGCTGAACTTGCAAGT
R:
ACACCAGCCACTCATACACCT
Band lengths:
176-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]