DreINT0005889 @ danRer10
Intron Retention
Gene
ENSDARG00000100818 | CCBL2 (2 of 5)
Description
cysteine conjugate-beta lyase 2 [Source:HGNC Symbol;Acc:HGNC:33238]
Coordinates
chr6:25121418-25122275:+
Coord C1 exon
chr6:25121418-25121543
Coord A exon
chr6:25121544-25122154
Coord C2 exon
chr6:25122155-25122275
Length
611 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGG
5' ss Score
6.6
3' ss Seq
TACAACTGTTTAATTTTTAGGTA
3' ss Score
10.09
Exon sequences
Seq C1 exon
AAGTCGACTGCAACAACTGGTATAAGTAGTGCTGACTGGGTTCTGGACCAGGAAGAACTTGCTAGTAAATTCAACTCCAAAACCAAGGCTATCATCATCAACACTCCTAATAACCCTATTGGAAAA
Seq A exon
GTAAGGTCACATACAGTTAAAGTCAGAATTGTTAGCCCCCCTTTGATTTTTTTTTATATATTTCCCAAATGATGTTTAACAGAGCAAAGAATTTTTTAAAACATATTTTTAATATATATTTTTGTAGTATTTATTTGTTTTATTTCGACTAGAATAAATGCATTTTTTTATTTTTTAGAACCTATTTTAAGGTCAAAATTATTAGCAACTTTAAGCTATTTTTTTTGATAGTCTACAGAACAAACCATCGTTATATAATAACTTGCCTAATTACCCTAACCTGCCCAGTTTACTTTATTAACCTAGTTAAGCCTTTAAATGTCCCTTTAAGCTGTAAAGAAGTGTCTTGAAAAGTGTCTTGAAAAATATCTAGTCAAATATAATTTACTGTCATAGATTGGGGAAAAAATTAACAGGGAGGCTAATAATTCAGGGGTGCTAATAATTCTGACTTCAACTGTAAATGACATGTCAAGTGGGTATGATTTTCAGGGAAATAAAGAACTGATAATATGTGTAATTGAATGTTCATATAAATAAAAGTGTTTGCCAAATACATAGATGTAAATGTGAAAGAGCAAATTGTTAATCTACAACTGTTTAATTTTTAG
Seq C2 exon
GTATTCAGTAGAAGTGAGTTGCAAGCTATTGCAGATCTCTGCATCAAACATGACACTCTGTGCTTCAGTGATGAGGTTTATGAATGGCTCATTTATAAAGGTCATGAACATGTAAAGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100818:ENSDART00000163440:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(10.7=100)
A:
NA
C2:
PF0015516=Aminotran_1_2=FE(10.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTCGACTGCAACAACTGGT
R:
CATGTTCATGACCTTTATAAATGAGC
Band lengths:
238-849
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]