HsaINT0030805 @ hg19

Intron Retention

Gene

ENSG00000177575 | CD163

Description

CD163 molecule [Source:HGNC Symbol;Acc:1631]

Coordinates

chr12:7633757-7635358:-

Coord C1 exon

chr12:7635239-7635358

Coord A exon

chr12:7633853-7635238

Coord C2 exon

chr12:7633757-7633852

Length

1386 bp

Sequences

Splice sites

5' ss Seq

CAGGTTTGA

5' ss Score

5.11

3' ss Seq

CTAGGGATCTCTGTTTTCAGTTT

3' ss Score

6

Exon sequences

Seq C1 exon

GTCGCTCATCCCGTCAGTCATCCTTTATTGCAGTCGGGATCCTTGGGGTTGTTCTGTTGGCCATTTTCGTCGCATTATTCTTCTTGACTAAAAAGCGAAGACAGAGACAGCGGCTTGCAG

Seq A exon

GTTTGAGCCAAATTTGGTTTATCTAATATGTCTACAGGATAAGGGGGTTCTTGTAAGACGAAAATATTAGACTCAAGTCTAATGGCCAGAAAGATGGACTCTAAAAGAGGTTTGAGCAGTTTCTCAAAACAGAGGGAAGGGCCAGGCACAGTGGCTCACACTTGTAATCCCTACACTTTGGGAGGCTGAGGCAGGAGAATTGCTTGAGTCCAGGAGTTCAAGACCAGCCTGGGCCACACAGGGAGCTCCCATTTCTACAGATTTTTTTCATTTTTTAAATAGAGGGAATAAGATTTCAGAGGAGAAAAGGGGTTTAGGTTGCATTGATGATTCCTGTGTTCTATCTACATGCTTAACTGGAACATTACAGAATTGAAAGTTCAGAATGAATATGTTAGATATTGTTTAGGATGACTTTTTACCTAAACATTTATTTTCTCTTACTATAATCAATCTCCTTATTACAAATTTTACTGTTCTGTTGAGCAATGTATTAGGCTCTGAAGATACAGACATGGACAATAAATCTTGGTGGAACTTCAAGTCTAGTGGAAGAGATATATATGTAAACAAATACACTACAATGTAGCCATTTTACATTAATAGGAAAAAGGAACAAAAGTGGCACAGAGAAGGGAGTAATTAACTGAAAGGGGAGGGGGATTACTGGAGGCTTCAAAGAGGCTTGGGGACAAATTTCGAACATAGAGGCTCAGAGAATTGGGTGAGGAACATTCTAGAGAAGAATATGTACAAGTCTAGAGAAGCCTAAAGGATGAAGCATTTCTTGTTTTTTTCCTGAGGGGCGGGGGGAGAAAAGTTGAGTGTGAGGAGAGAGGCTGCTAAGTCTGAAGAAGAGAAAAGGCACAAATTATGAAGTTCTTATGTTTCACATAAGATTCATAGTCATTAAAGAGTATCATGTAGGGGAGTGAAATGGTCAAGATATCTTTTAGGAAGATCTTTTGGCAACGGGATCTAGGAGGATTGAAGGAGGACCACTTGACTGACAGGAATGGCATTTTGTAACAGTTGAGGTGAAAAATGAAAAGTACTATAACATATATAGTGAGAATGGAGGGGAGAGGAAAGACTTTTAGAGATACTTAAGAAAAGCTCCAGTGAGTTATGGAAGACTGCTGGCTTCCTTGGGTAAAAACAGTGGGTTGTTTATATTAATACAATGGCAGTGGGGAAGATTTAGCCTTGTGCCTATTTCATTTGAGTGTGCGGAATTGTAAGGGAAGAGCTTGGTAGTAGAATGGGATAGAAACAATAGCAGGGATAAAGACGAGGTATGTTTGCAGCGCTTGGAAAAAACACACTTACAGCAAGGGAAATTTTATTATGATAGCTGATCCCTAACCTAGGGATCTCTGTTTTCAG

Seq C2 exon

TTTCCTCAAGAGGAGAGAACTTAGTCCACCAAATTCAATACCGGGAGATGAATTCTTGCCTGAATGCAGATGATCTGGACCTAATGAATTCCTCAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000177575-CD163:NM_203416:14

Average complexity

IR-S

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.033 A=NA C2=0.054

Domain overlap (PFAM):

C1:

PF0168214=DB=PD(15.9=25.0),PF135841=BatD=FE(42.4=100),PF063657=CD34_antigen=FE(37.9=100),PF066977=DUF1191=FE(38.2=100),PF151021=TMEM154=FE(44.3=100),PF118373=DUF3357=FE(48.1=100),PF097774=OSTMP1=FE(49.4=100),PF0769011=MFS_1=FE(52.7=100),PF041569=IncA=PU(62.1=90.0),PF145751=EphA2_TM=PU(59.3=80.0)

A:

NA

C2:

NO

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSP00000352071