HsaINT0030805 @ hg38
Intron Retention
Gene
ENSG00000177575 | CD163
Description
CD163 molecule [Source:HGNC Symbol;Acc:HGNC:1631]
Coordinates
chr12:7481161-7482762:-
Coord C1 exon
chr12:7482643-7482762
Coord A exon
chr12:7481257-7482642
Coord C2 exon
chr12:7481161-7481256
Length
1386 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGA
5' ss Score
5.11
3' ss Seq
CTAGGGATCTCTGTTTTCAGTTT
3' ss Score
6
Exon sequences
Seq C1 exon
GTCGCTCATCCCGTCAGTCATCCTTTATTGCAGTCGGGATCCTTGGGGTTGTTCTGTTGGCCATTTTCGTCGCATTATTCTTCTTGACTAAAAAGCGAAGACAGAGACAGCGGCTTGCAG
Seq A exon
GTTTGAGCCAAATTTGGTTTATCTAATATGTCTACAGGATAAGGGGGTTCTTGTAAGACGAAAATATTAGACTCAAGTCTAATGGCCAGAAAGATGGACTCTAAAAGAGGTTTGAGCAGTTTCTCAAAACAGAGGGAAGGGCCAGGCACAGTGGCTCACACTTGTAATCCCTACACTTTGGGAGGCTGAGGCAGGAGAATTGCTTGAGTCCAGGAGTTCAAGACCAGCCTGGGCCACACAGGGAGCTCCCATTTCTACAGATTTTTTTCATTTTTTAAATAGAGGGAATAAGATTTCAGAGGAGAAAAGGGGTTTAGGTTGCATTGATGATTCCTGTGTTCTATCTACATGCTTAACTGGAACATTACAGAATTGAAAGTTCAGAATGAATATGTTAGATATTGTTTAGGATGACTTTTTACCTAAACATTTATTTTCTCTTACTATAATCAATCTCCTTATTACAAATTTTACTGTTCTGTTGAGCAATGTATTAGGCTCTGAAGATACAGACATGGACAATAAATCTTGGTGGAACTTCAAGTCTAGTGGAAGAGATATATATGTAAACAAATACACTACAATGTAGCCATTTTACATTAATAGGAAAAAGGAACAAAAGTGGCACAGAGAAGGGAGTAATTAACTGAAAGGGGAGGGGGATTACTGGAGGCTTCAAAGAGGCTTGGGGACAAATTTCGAACATAGAGGCTCAGAGAATTGGGTGAGGAACATTCTAGAGAAGAATATGTACAAGTCTAGAGAAGCCTAAAGGATGAAGCATTTCTTGTTTTTTTCCTGAGGGGCGGGGGGAGAAAAGTTGAGTGTGAGGAGAGAGGCTGCTAAGTCTGAAGAAGAGAAAAGGCACAAATTATGAAGTTCTTATGTTTCACATAAGATTCATAGTCATTAAAGAGTATCATGTAGGGGAGTGAAATGGTCAAGATATCTTTTAGGAAGATCTTTTGGCAACGGGATCTAGGAGGATTGAAGGAGGACCACTTGACTGACAGGAATGGCATTTTGTAACAGTTGAGGTGAAAAATGAAAAGTACTATAACATATATAGTGAGAATGGAGGGGAGAGGAAAGACTTTTAGAGATACTTAAGAAAAGCTCCAGTGAGTTATGGAAGACTGCTGGCTTCCTTGGGTAAAAACAGTGGGTTGTTTATATTAATACAATGGCAGTGGGGAAGATTTAGCCTTGTGCCTATTTCATTTGAGTGTGCGGAATTGTAAGGGAAGAGCTTGGTAGTAGAATGGGATAGAAACAATAGCAGGGATAAAGACGAGGTATGTTTGCAGCGCTTGGAAAAAACACACTTACAGCAAGGGAAATTTTATTATGATAGCTGATCCCTAACCTAGGGATCTCTGTTTTCAG
Seq C2 exon
TTTCCTCAAGAGGAGAGAACTTAGTCCACCAAATTCAATACCGGGAGATGAATTCTTGCCTGAATGCAGATGATCTGGACCTAATGAATTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177575:ENST00000359156:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=NA C2=0.076
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCTCATCCCGTCAGTCATC
R:
CTGAGGAATTCATTAGGTCCAGA
Band lengths:
215-1601
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development