RnoINT0031933 @ rn6
Intron Retention
Gene
ENSRNOG00000010253 | Cd163
Description
CD163 molecule [Source:RGD Symbol;Acc:1310382]
Coordinates
chr4:156779747-156781024:+
Coord C1 exon
chr4:156779747-156779854
Coord A exon
chr4:156779855-156780934
Coord C2 exon
chr4:156780935-156781024
Length
1080 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGA
5' ss Score
5.06
3' ss Seq
ATCCCTAACTCTGTTGTCAGTTT
3' ss Score
5.76
Exon sequences
Seq C1 exon
GTCATTCAACCCTCACTGCACTCCTGGTTTGTGGAGCCATTCTATTGGTCCTTCTCATTGCCTTCCTCTTGTGGACTCTGAAGCGACGACAGACCCAACGGCTTACAG
Seq A exon
GTCTGAGCAAATGACGATCTCTCTAACATATTCATGGGATAAAGGCATTCTTGGTACAATTAAAATCTAAATAAGCAAATTACTCAAGTATGCAATGACTAGAAAGCAGGGGTCTATAAAAGGTTTGAAGAGTTTCTTGGAATATAAGGAGCAGGGAGAGAAGTTCTGGTTATAATAATGTACTCTGCATTCTATAGGTTTAATTGGCAAAGTTAATTAACATAACTGGTAGTTTAGAATGAATATACAATTTACGTTTTAAGATGAAGGTTTGCCCATACTTAATTTTCTCCAACCTTAATAACCTTAACATAGAATTGAATTATTCTATGAAACAACGTGCTAGGATCTGAAGGTGAGAAGGGGGATAATAAAATATTTTTGGTTTATGGAATTTTGGGTTTAGGAGAATACTGATAATGCAGTGCTCTATTAATAAGAATGAGAAATAAAGTGACAAAAAAAGAGATTATCTAAAGTAAAAGGGAGGATGGAGGGCTTCTGGGACACCTTTTGAGACAGATTTTAAAGAGAGTTCAGATAATTGAGCAAGAGAAAGAGGACACGAGCAAGTGCAAGAAAGTATAAAGGATGGCACAGTTGTCTGCATCAAGTGAAATGAGGGTCAAATAGAGAAGCTGCCTGCCAAGCAAGGAACGAACAAGTTGTGAAACGCTTGTATATGAAAGTCCAAGATTGCCTGGTCGTTAGAATAGAATGTGAGGGAAGCAAGGGGATCAAGTTGTCCTTTCGAAAGAACTTTAAGCAAGCGCATGCGTGAAAGGTTTGAGTAGAGCCTCGGGGTGGACAGGAGCACCCCTGTGGAACAGGAAAAGGCTTTAGAGTGAGAATGGAGGGAAGACGACGCACTTTCAGTCAGTCACAGAGCATTGTTGGCTTCCTTGGTAGGAGAGTAGGTCATTACATCATGACGTAGAGACGATTTCCTGTCTCCTAGAGTAGGCTATTTGAAAACAACAGCGTAGGTAATGACTGGGTATGTTTAAATTGCTGATGAAAGGCTAGGATGAAGGGGAGACAGTTTTATGGGTGCCCGCTGATCCCTAACTCTGTTGTCAG
Seq C2 exon
TTTCCTCAAGAGGAGAGGTCTTGATACATCAAGTTCAGTACCAAGAGATGGATTCGAAGACGGATGATCTGGACTTGCTGAAATCCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010253:ENSRNOT00000068407:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATTCAACCCTCACTGCACT
R:
CCGAGGATTTCAGCAAGTCCA
Band lengths:
198-1278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]