HsaINT0031206 @ hg19
Intron Retention
Gene
ENSG00000196352 | CD55
Description
CD55 molecule, decay accelerating factor for complement (Cromer blood group) [Source:HGNC Symbol;Acc:2665]
Coordinates
chr1:207498967-207500182:+
Coord C1 exon
chr1:207498967-207499066
Coord A exon
chr1:207499067-207500096
Coord C2 exon
chr1:207500097-207500182
Length
1030 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
TTCTTCCCCTGTTGCTTTAGGTA
3' ss Score
10.74
Exon sequences
Seq C1 exon
AGAAATCATGCCCTAATCCGGGAGAAATACGAAATGGTCAGATTGATGTACCAGGTGGCATATTATTTGGTGCAACCATCTCCTTCTCATGTAACACAGG
Seq A exon
GTAAGTTTGGGCATACTAAAACCCTGTATTTAGGAAATGAGAAAACAAATTAGGACTTAAGGTGAGATTGTTAGTTTCATGACTGGTATTCACAGCTAGTAGCAATTAAAACAATCCCTCTCCTCAAAGACCCTTCATCATGAGCTCATCACAGTTAAATTTAGTAAAATGGGGGCAAGAAAGGAAGATTTCTTAAACCACCAGAATTCTCTAAATTCTGATTTCAGTAAATATGTGATTCAATATAAAATTTTAAATGTGATTAATAAAAAAATTTGAGATGATGATACTTGCAGAAATCTTCAAATGTTAAATACTAAACCAATCTTTAGTTGACCTAAATAATGAATTTGCATGAGTTTTTCTATATGCAAACAAGCTGTTACAAAACAGCATGAGTTAAAGACATTCCTAGTGTGAAAGTATTCTAAGTTCTTTGATAAGTTCTCTGTATAGGGAGAAGGAACTCATTCATTGAGTACCATCAATGTCTCAGACACTGTTGAAAACTTTACATTTATTTTCTCATTTCATATCTGTAAATTAAATAATTCTATTTTACTCTGTGTGTGTCCCTATTCTTTATAAAGTAAAAATATCAGTATCACTTGTCTCCTATACGAAACACAGATATTGGTTAGGTCATGAACACAAAATCTGGGAAGTACTTTGAACCCTTTAAATATAAGTACATTCTATTATTCTGTGAAGCCCATATTTAGAACTCAGAGGTATAAAATGTTCAATCATCTATGTCATTTAAAAATGTTTAAAACACTTTTATGCTTTCTAACATATTCCCCATGCAAATAAAAAATGTACATGTCTTATCTGTTTTTACTCTTTGGATGTCACGTTTTTAAACTTAATTTTTCTTTTCCTTTAAACTACTGTGTGGACTTTTATCAACTACTGTTTTATATTCACCTAATTGTGTAGTAAATATTTTAAGATAATAACCTGGAGAATTTGAGGAAAGTCAAATATGTGTGAATGTAACAAACTCTTTTTTCTTCCCCTGTTGCTTTAG
Seq C2 exon
GTACAAATTATTTGGCTCGACTTCTAGTTTTTGTCTTATTTCAGGCAGCTCTGTCCAGTGGAGTGACCCGTTGCCAGAGTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196352-CD55:NM_001114752:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.002 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PU(51.7=88.2)
A:
NA
C2:
PF0008415=Sushi=PD(46.6=90.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAATCATGCCCTAATCCGG
R:
GCACTCTGGCAACGGGTC
Band lengths:
182-1212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)