MmuINT0032421 @ mm9
Intron Retention
Gene
ENSMUSG00000026399 | Cd55
Description
CD55 antigen [Source:MGI Symbol;Acc:MGI:104850]
Coordinates
chr1:132353398-132354763:-
Coord C1 exon
chr1:132354664-132354763
Coord A exon
chr1:132353484-132354663
Coord C2 exon
chr1:132353398-132353483
Length
1180 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
CTTCCTTCCCTCTCCTTTAGGTA
3' ss Score
13.95
Exon sequences
Seq C1 exon
AAAAATCATGCCCTAATCCTAAAGATCTGGATAATGGTCACATCAACATACCAACCGGCATATTATTCGGTTCAGAAATAAACTTCTCATGCAACCCAGG
Seq A exon
GTAAGTTTCATCACTCTAAGACTCTATAATCAATTAATGAACTAAAGAAATCAGTTCAGTGAACACTGATAGATTTGTGGACTGTAGTCACTGGTGGATAGCACTAAAACAGTCCCCCATAGTGAGAGTGAGGGTGAGTGTGCACTATGCACAGTAGTGCACATGTGTGTAAATGCCAAAATGAAAGCTATTTTCTATAGTATACTGAGGAAAAAAAAACTGTTCCCCAAAGAACCTTTGTCATGAGCTCTTTGTGGTAATGTGTTACAAGCAAACTTATTAGTTACAAGTAAACTTAGTAATGTAGACCAGGGTAAAGTTTTTATACTTCTAATTTCTCTAGATTTTTAGATCCAATACATATGAAGTTCTAAATGTGATAAGTGTAGCTACTACTGAAATATATGTCCATGATACAAAAATAACAATCCCTAAAGTGTTAGAAATCAAACTAATTTTAAACTGGCTTAAATAGTAATTTGCATCTCAGTTTTAATAGATGCAAATAAATTGTTATATCATGGGCTAAGAAAAAAGCCTAGTGTGGAAATGCCCTCCTATCAGAAAGTTTTCTTAGGTCTTCATTTGGGCTTCATGTAGAACAAGGAAGTTCTTTAAGTGTCATCAGCGACTCACCCACTTTGTTCATTTCCTTTCTATGTTCTGAGTCCAGTCACCACCCCTCCCTCCTTCCGACAGAAATAGGGCTACGTGGGTCTAGTGGATTCATAAGAGCCCAGGGTTTGGGAAGGAGCAGGTGGAGAGCCAGATGAGGGGTTAGAAAATCAGGAAGGAGGGCTGGGTTTCATCAAAACACCTTAAAGATGTGTGGAAAGTTCTCAAAATGTTTTCCTAAAAGCCAAGGGAAGCAAGATCCCTTCCTTTTAGAACTTGGAGTGAAAGATCTCATCACACATGATTTTAGAAGATTTTTGTCATATATGTATTTTTAATGCTGCAAGCAAAAGAAGCATTTTGCATGTCTGGAAGTCTTGCCATTTCAGTATCATCTCTGTGAGCTAAATTTTTAACCTTTTAAAATTTCCATCTAGATGGTTATCAAAATTGTCATTTTGTCTCTATTTTCTAGTGGAGTAAATCTTTTAAAATGAAGTTCTGGAGAATTTAAAAGACAAGCCTTCTGTCGTGAATATGACAGCCTTCCTTCCCTCTCCTTTAG
Seq C2 exon
GTACAGGCTAGTCGGTGTCTCCTCTACTTTCTGTTCTGTCACAGGAAATACTGTTGATTGGGACGATGAGTTTCCAGTGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026399-Cd55:NM_010016:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PU(51.7=88.2)
A:
NA
C2:
PF0008415=Sushi=PD(46.6=90.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATGCCCTAATCCTAAAGATCTGG
R:
CTGTGCACACTGGAAACTCAT
Band lengths:
182-1362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: